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⊟Summary[edit | edit source]
- pan ID?: SAUPAN004139000
- symbol?: cshB
- synonym:
- description?: DEAD/DEAH box family ATP-dependent RNA helicase
- DEAD/DEAH box family ATP-dependent RNA helicase
- DEAD/DEAH box helicase
- ATP-dependent RNA helicase, DEAD-DEAH box family
- ATP-dependent RNA helicase DEAD/DEAH box family protein
- DEAD-box ATP dependent DNA helicase
- ATP-dependent RNA helicase YqfR
- putative helicase
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 4406782..4408147
- synteny block?: BlockID0031690
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1516 (yqfR)
08BA02176:
C248_1601
11819-97:
MS7_1575 (cshB)
6850:
RSAU_001423
71193:
ST398NM01_1623
ECT-R 2:
ECTR2_1408
ED133:
SAOV_1558
ED98:
SAAV_1550
HO 5096 0412:
SAEMRSA15_14780
JH1:
SaurJH1_1650
JH9:
SaurJH9_1616
JKD6008:
SAA6008_01527
JKD6159:
SAA6159_01493
LGA251:
SARLGA251_14640
M013:
M013TW_1573
MRSA252:
SAR1635
MSHR1132:
SAMSHR1132_13980
MSSA476:
SAS1496
Mu3:
SAHV_1545
Mu50:
SAV1558
MW2:
MW1510
RF122:
SAB1430c
ST398:
SAPIG1623
T0131:
SAT0131_01652
TCH60:
HMPREF0772_11582
TW20:
SATW20_15540
USA300_TCH1516:
USA300HOU_1560
VC40:
SAVC_07040
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MAKHPFEQFNLESSLIDAVKDLNFEKPTEIQNRIIPRILKRTNLIGQSQTGTGKSHAFLL
N315 MAKHPFEQFNLESSLIDAVKDLNFEKPTEIQNRIIPRILKRTNLIGQSQTGTGKSHAFLL
NCTC8325 MAKHPFEQFNLESSLIDAVKDLNFEKPTEIQNRIIPRILKRTNLIGQSQTGTGKSHAFLL
Newman MAKHPFEQFNLESSLIDAVKDLNFEKPTEIQNRIIPRILKRTNLIGQSQTGTGKSHAFLL
USA300_FPR3757 MAKHPFEQFNLESSLIDAVKDLNFEKPTEIQNRIIPRILKRTNLIGQSQTGTGKSHAFLL
************************************************************
COL PLMQLIDSEIKEPQAIVVAPTRELAQQLYDAANHLSQFKAGVSVKVFIGGTDIEKDRQRC
N315 PLMQLIDSEIKEPQAIVVAPTRELAQQLYDAANHLSQFKAGVSVKVFIGGTDIEKDRQRC
NCTC8325 PLMQLIDSEIKEPQAIVVAPTRELAQQLYDAANHLSQFKAGVSVKVFIGGTDIEKDRQRC
Newman PLMQLIDSEIKEPQAIVVAPTRELAQQLYDAANHLSQFKAGVSVKVFIGGTDIEKDRQRC
USA300_FPR3757 PLMQLIDSEIKEPQAIVVAPTRELAQQLYDAANHLSQFKAGVSVKVFIGGTDIEKDRQRC
************************************************************
COL NAQPQLIIGTPTRINDLAKTGHLHVHLASYLVIDEADLMIDLGLIEDVDYIAARLEDNAN
N315 NAQPQLIIGTPTRINDLAKTGHLHVHLASYLVIDEADLMIDLGLIEDVDYIAARLEDNAN
NCTC8325 NAQPQLIIGTPTRINDLAKTGHLHVHLASYLVIDEADLMIDLGLIEDVDYIAARLEDNAN
Newman NAQPQLIIGTPTRINDLAKTGHLHVHLASYLVIDEADLMIDLGLIEDVDYIAARLEDNAN
USA300_FPR3757 NAQPQLIIGTPTRINDLAKTGHLHVHLASYLVIDEADLMIDLGLIEDVDYIAARLEDNAN
************************************************************
COL IAVFSATIPQQLQPFLNKYLSHPEYVAVDSKKQNKKNIEFYLIPTKGAAKVEKTLNLIDI
N315 IAVFSATIPQQLQPFLNKYLSHPEYVAVDSKKQNKKNIEFFLIPTKGAAKVEKTLNLIDI
NCTC8325 IAVFSATIPQQLQPFLNKYLSHPEYVAVDSKKQNKKNIEFYLIPTKGAAKVEKTLNLIDI
Newman IAVFSATIPQQLQPFLNKYLSHPEYVAVDSKKQNKKNIEFYLIPTKGAAKVEKTLNLIDI
USA300_FPR3757 IAVFSATIPQQLQPFLNKYLSHPEYVAVDSKKQNKKNIEFYLIPTKGAAKVEKTLNLIDI
****************************************:*******************
COL LNPYLCIIFCNSRDNANDLARSLNEAGIKVGMIHGGLTPRERKQQMKRIRNLEFQYVIAS
N315 LNPYLCIIFCNSRDNANDLARSLNEAGIKVGMIHGGLTPRERKQQMKRIRNLEFQYVIAS
NCTC8325 LNPYLCIIFCNSRDNANDLARSLNEAGIKVGMIHGGLTPRERKQQMKRIRNLEFQYVIAS
Newman LNPYLCIIFCNSRDNANDLARSLNEAGIKVGMIHGGLTPRERKQQMKRIRNLEFQYVIAS
USA300_FPR3757 LNPYLCIIFCNSRDNANDLARSLNEAGIKVGMIHGGLTPRERKQQMKRIRNLEFQYVIAS
************************************************************
COL DLASRGIDIEGVSHVINFDVPNDIDFFTHRVGRTGRGNYKGVAITLYSPDEEHNISLIED
N315 DLASRGIDIEGVSHVINFDVPNDIDFFTHRVGRTGRGNYKGVAITLYSPDEEHNISLIED
NCTC8325 DLASRGIDIEGVSHVINFDVPNDIDFFTHRVGRTGRGNYKGVAITLYSPDEEHNISLIED
Newman DLASRGIDIEGVSHVINFDVPNDIDFFTHRVGRTGRGNYKGVAITLYSPDEEHNISLIED
USA300_FPR3757 DLASRGIDIEGVSHVINFDVPNDIDFFTHRVGRTGRGNYKGVAITLYSPDEEHNISLIED
************************************************************
COL RGFVFNTVDIKDGELKEVKAHNQRQARMRKDDHLTNQVKNKVRSKIKNKVKPGYKKKFKQ
N315 RGFVFNTVDIKDGELKEVKAHNQRQARMRKDDHLTNQVKDKVRSKIKNKVKPGYKKKFKQ
NCTC8325 RGFVFNTVDIKDGELKEVKAHNQRQARMRKDDHLTNQVKNKVRSKIKNKVKPGYKKKFKQ
Newman RGFVFNTVDIKDGELKEVKAHNQRQARMRKDDHLTNQVKNKVRSKIKNKVKPGYKKKFKQ
USA300_FPR3757 RGFVFNTVDIKDGELKEVKAHNQRQARMRKDDHLTNQVKNKVRSKIKNKVKPGYKKKFKQ
***************************************:********************
COL EVEKMKRQERKQFSKQQNRQKRKQNKKG
N315 EVEKMKRQERKQFSKQQNRQKRKQNKKG
NCTC8325 EVEKMKRQERKQFSKQQNRQKRKQNKKG
Newman EVEKMKRQERKQFSKQQNRQKRKQNKKG
USA300_FPR3757 EVEKMKRQERKQFSKQQNRQKRKQNKKG
****************************