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⊟Summary[edit | edit source]
- pan ID?: SAUPAN004041000
- symbol?: —
- synonym:
- description?: AraC family transcriptional regulator
- AraC family transcriptional regulator
- transcriptional regulator, AraC family, putative
- transcriptional regulator AraC family protein
- AarP
- AraC/XylS family transcriptional regulator
- AraC family regulatory protein
- AraC family transcription regulator
- regulatory helix-turn-helix proteins, AraC family protein
- transcription activator, effector binding
- transcription activator, effector binding domain-containing protein
- transcription activator effector binding
- transcriptional regulator, AraC family
- Transcription regulator AraC/XylS family
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 4328331..4329224
- synteny block?: BlockID0030780
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1463
08BA02176:
C248_1548
11819-97:
MS7_1524
6850:
RSAU_001373
71193:
ST398NM01_1572
ECT-R 2:
ECTR2_1357
ED133:
SAOV_1508
ED98:
SAAV_1497
HO 5096 0412:
SAEMRSA15_14280
JH1:
SaurJH1_1594
JH9:
SaurJH9_1563
JKD6008:
SAA6008_01476
JKD6159:
SAA6159_01435
LGA251:
SARLGA251_14140
M013:
M013TW_1521
MRSA252:
SAR1583
MSHR1132:
SAMSHR1132_13450
MSSA476:
SAS1446
Mu3:
SAHV_1494 (graE)
Mu50:
SAV1506
MW2:
MW1460
RF122:
SAB1367
ST398:
SAPIG1572
T0131:
SAT0131_01600
TCH60:
HMPREF0772_11635
TW20:
SATW20_15040
USA300_TCH1516:
USA300HOU_1508
VC40:
SAVC_06780
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MIELIGVKVLDVIKQIQQAIVYIEDRLLEPFNLQELSDYVGLSPYHLDQSFKMIVGLSPE
N315 ---------MDVIKQIQQAIVYIEDRLLEPFNLQELSDYVGLSPYHLDQSFKMIVGLSPE
NCTC8325 MIELIGVKVLDVIKQIQQAIVYIEDRLLEPFNLQELSDYVGLSPYHLDQSFKMIVGLSPE
Newman MIELIGVKVLDVIKQIQQAIVYIEDRLLEPFNLQELSDYVGLSPYHLDQSFKMIVGLSPE
USA300_FPR3757 MIELIGVKVLDVIKQIQQAIVYIEDRLLEPFNLQELSDYVGLSPYHLDQSFKMIVGLSPE
:**************************************************
COL AYARARKMTLAANDVINGATRLVDIAKKYHYANSNDFANDFSDFHGVSPIQASTKKDELQ
N315 AYARARKMTLAANDVINGATRLVDIAKKYHYANSNDFANDFSDFHGVSPIQASTKKDELQ
NCTC8325 AYARARKMTLAANDVINGATRLVDIAKKYHYANSNDFANDFSDFHGVSPIQASTKKDELQ
Newman AYARARKMTLAANDVINGATRLVDIAKKYHYANSNDFANDFSDFHGVSPIQASTKKDELQ
USA300_FPR3757 AYARARKMTLAANDVINGATRLVDIAKKYHYANSNDFANDFSDFHGVSPIQASTKKDELQ
************************************************************
COL IQERLYIKLSTTERAPYPYRLEETDDISLVGYARFIDTKYLSHPFNVPDFLEDLLIDGKI
N315 IQERLYIKLSTTERAPYPYRLEETDDISLVGYARFIDTKYLSHPFNVPDFLEDLLIDGKI
NCTC8325 IQERLYIKLSTTERAPYPYRLEETDDISLVGYARFIDTKYLSHPFNVPDFLEDLLIDGKI
Newman IQERLYIKLSTTERAPYPYRLEETDDISLVGYARFIDTKYLSHPFNVPDFLEDLLIDGKI
USA300_FPR3757 IQERLYIKLSTTERAPYPYRLEETDDISLVGYARFIDTKYLSHPFNVPDFLEDLLIDGKI
************************************************************
COL KELRRYNDVSPFELFVISCPLENGLEIFVGVPSERYPAHLESRFLPGKHCAKFNLQGEID
N315 KELRRYNDVSPFELFVISCPLENGLEIFVGVPSERYPAHLESRFLPGKHCAKFNLQGEID
NCTC8325 KELRRYNDVSPFELFVISCPLENGLEIFVGVPSERYPAHLESRFLPGKHCAKFNLQGEID
Newman KELRRYNDVSPFELFVISCPLENGLEIFVGVPSERYPAHLESRFLPGKHCAKFNLQGEID
USA300_FPR3757 KELRRYNDVSPFELFVISCPLENGLEIFVGVPSERYPAHLESRFLPGKHCAKFNLQGEID
************************************************************
COL YATNEAWYYIESSLQLTLPYERNDLYVEVYPLDISFNDPFTKIQLWIPVKQSPYDED
N315 YATNEAWYYIESSLQLTLPYERNDLYVEVYPLDISFNDPFTKIQLWIPVKQSPYDED
NCTC8325 YATNEAWYYIESSLQLTLPYERNDLYVEVYPLDISFNDPFTKIQLWIPVKQSPYDED
Newman YATNEAWYYIESSLQLTLPYERNDLYVEVYPLDISFNDPFTKIQLWIPVKQSPYDED
USA300_FPR3757 YATNEAWYYIESSLQLTLPYERNDLYVEVYPLDISFNDPFTKIQLWIPVKQSPYDED
*********************************************************