PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN004026000
• symbol^?: rluB
• synonym:
• description^?: ribosomal large subunit pseudouridine synthase B

  descriptions from strain specific annotations:

  • ribosomal large subunit pseudouridine synthase B
  • rRNA pseudouridine synthase
  • Pseudouridine synthase
  • ribosomal large subunit pseudouridine synthase B (rRNA-uridine isomerase B) (rRNA pseudouridylate synthase B)
  • ribosomal large subunit pseudouridine synthase B, RluB
• strand^?: -
• coordinates^?: 4317295..4318032
• synteny block^?: BlockID0030630
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL1536 (rluB)
N315:
SA1324 (rluB)
NCTC8325:
SAOUHSC_01587
Newman:
NWMN_1401 (rluB)
USA300_FPR3757:
SAUSA300_1443 (rluB)
04-02981:
SA2981_1450 (rluB)
08BA02176:
C248_1533 (rluB)
11819-97:
MS7_1510 (rluB)
6850:
RSAU_001361 (rluB)
71193:
ST398NM01_1559
ECT-R 2:
ECTR2_1344
ED133:
SAOV_1495
ED98:
SAAV_1483 (rluB)
HO 5096 0412:
SAEMRSA15_14150 (rluB)
JH1:
SaurJH1_1581
JH9:
SaurJH9_1550
JKD6008:
SAA6008_01463 (rluB)
JKD6159:
SAA6159_01422 (rluB)
LGA251:
SARLGA251_14010 (rluB)
M013:
M013TW_1507
MRSA252:
SAR1569 (rluB)
MSHR1132:
SAMSHR1132_13320
MSSA476:
SAS1433
Mu3:
SAHV_1481 (rluB)
Mu50:
SAV1493 (rluB)
MW2:
MW1447 (rluB)
RF122:
SAB1354c (rluB)
ST398:
SAPIG1559 (rluB)
T0131:
SAT0131_01586
TCH60:
HMPREF0772_11648 (rluB)
TW20:
SATW20_14910 (rluB)
USA300_TCH1516:
USA300HOU_1495 (rluB)
VC40:
SAVC_06715

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MTKELERLQKRIANSGYTSRRKAETLISEGKVKVNGTTVTELGTKVKPSDTIEVEGIKIE
  N315            MTKELERLQKRIANSGYTSRRKAETLISEGKVKVNGTTVTELGTKVKPSDTIEVEGIKIE
  NCTC8325        MTKELERLQKRIANSGYTSRRKAETLISEGKVKVNGTTVTELGTKVKPSDTIEVEGIKIE
  Newman          MTKELERLQKRIANSGYTSRRKAETLISEGKVKVNGTTVTELGTKVKPSDTIEVEGIKIE
  USA300_FPR3757  MTKELERLQKRIANSGYTSRRKAETLISEGKVKVNGTTVTELGTKVKPSDTIEVEGIKIE
                  ************************************************************
  
  COL             LEDKIYILFHKPTQVITSVSDDRGRTVVTDYFKDIEARIYPVGRLDYDTSGLLLLTNDGE
  N315            LEDKIYILFHKPTQVITSVSDDRGRTVVTDYFKDIEARIYPVGRLDYDTSGLLLLTNDGE
  NCTC8325        LEDKIYILFHKPTQVITSVSDDRGRTVVTDYFKDIEARIYPVGRLDYDTSGLLLLTNDGE
  Newman          LEDKIYILFHKPTQVITSVSDDRGRTVVTDYFKDIEARIYPVGRLDYDTSGLLLLTNDGE
  USA300_FPR3757  LEDKIYILFHKPTQVITSVSDDRGRTVVTDYFKDIEARIYPVGRLDYDTSGLLLLTNDGE
                  ************************************************************
  
  COL             FTNLMTHPRYQIKKKYVAKLKGYLMREEVKALEKGIELEDGMTQPAEVKVKKQDKDKNTT
  N315            FTNLMTHPRYQIKKKYVAKLKGYLMREEVKALEKGIELEDGMTQPAEVKVKKQDKDKNTT
  NCTC8325        FTNLMTHPRYQIKKKYVAKLKGYLMREEVKALEKGIELEDGMTQPAEVKVKKQDKDKNTT
  Newman          FTNLMTHPRYQIKKKYVAKLKGYLMREEVKALEKGIELEDGMTQPAEVKVKKQDKDKNTT
  USA300_FPR3757  FTNLMTHPRYQIKKKYVAKLKGYLMREEVKALEKGIELEDGMTQPAEVKVKKQDKDKNTT
                  ************************************************************
  
  COL             LVEITITEGRNRQVRRMFEHFGHQVTKLSRIEYGPLNVVGLNAGEGRVLTPHEVKVMRHL
  N315            LVEITITEGRNRQVRRMFEHFGHQVTKLSRIEYGPLNVVGLNAGEGRVLTPHEVKVMRHL
  NCTC8325        LVEITITEGRNRQVRRMFEHFGHQVTKLSRIEYGPLNVVGLNAGEGRVLTPHEVKVMRHL
  Newman          LVEITITEGRNRQVRRMFEHFGHQVTKLSRIEYGPLNVVGLNAGEGRVLTPHEVKVMRHL
  USA300_FPR3757  LVEITITEGRNRQVRRMFEHFGHQVTKLSRIEYGPLNVVGLNAGEGRVLTPHEVKVMRHL
                  ************************************************************
  
  COL             AEHGK
  N315            AEHGK
  NCTC8325        AEHGK
  Newman          AEHGK
  USA300_FPR3757  AEHGK
                  *****