PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN003929000
• symbol^?: ndk
• synonym:
• description^?: nucleoside diphosphate kinase

  descriptions from strain specific annotations:

  • nucleoside diphosphate kinase
  • nucleoside diphosphate kinase, putative
  • mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-phosphodiesterase
  • nucleoside diphosphate kinase (NDK) (NDP kinase)(Nucleoside-2-P kinase)
  • nucleoside diphosphate kinase superfamily
  • putative nucleoside diphosphate kinase
• strand^?: -
• coordinates^?: 4249229..4249660
• synteny block^?: BlockID0029750
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL1509 (ndk)
N315:
SA1301 (ndk)
NCTC8325:
SAOUHSC_01485 (ndk)
Newman:
NWMN_1378 (ndk)
USA300_FPR3757:
SAUSA300_1358 (ndk)
04-02981:
SA2981_1425 (ndk)
08BA02176:
C248_1508 (ndk)
11819-97:
MS7_1423 (ndk)
6850:
RSAU_001339 (ndk)
71193:
ST398NM01_1467
ECT-R 2:
ECTR2_1321
ED133:
SAOV_1475
ED98:
SAAV_1456 (ndk)
HO 5096 0412:
SAEMRSA15_13290 (ndk)
JH1:
SaurJH1_1556 (ndk)
JH9:
SaurJH9_1526 (ndk)
JKD6008:
SAA6008_01437 (ndk)
JKD6159:
SAA6159_01333 (ndk)
LGA251:
SARLGA251_13810 (ndk)
M013:
M013TW_1416
MRSA252:
SAR1478 (ndk)
MSHR1132:
SAMSHR1132_13080
MSSA476:
SAS1410 (ndk)
Mu3:
SAHV_1457 (ndk)
Mu50:
SAV1469 (ndk)
MW2:
MW1358 (ndk)
RF122:
SAB1331c (ndk)
ST398:
SAPIG1467
T0131:
SAT0131_01557 (set4nm)
TCH60:
HMPREF0772_11737 (ndk)
TW20:
SATW20_14660 (ndk)
USA300_TCH1516:
USA300HOU_1406 (ndk)
VC40:
SAVC_06595 (ndk)

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYND
  N315            MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYND
  NCTC8325        ------MIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYND
  Newman          MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYND
  USA300_FPR3757  ------MIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYND
                        ******************************************************
  
  COL             LISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSL
  N315            LISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSL
  NCTC8325        LISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSL
  Newman          LISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSL
  USA300_FPR3757  LISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSL
                  ************************************************************
  
  COL             ESAEREINLWFNENEITSYASPRDAWLYE
  N315            ESAEREINLWFNENEITSYASPRDAWLYE
  NCTC8325        ESAEREINLWFNENEITSYASPRDAWLYE
  Newman          ESAEREINLWFNENEITSYASPRDAWLYE
  USA300_FPR3757  ESAEREINLWFNENEITSYASPRDAWLYE
                  *****************************