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⊟Summary[edit | edit source]
- pan ID?: SAUPAN003861000
- symbol?: cvfC
- synonym:
- description?: virulence factor C
- virulence factor C
- putative virulence factor C
- virulence factor
- conserved virulence factor C
- Fe-S cluster assembly protein
- HEAT repeat-containing PBS lyase
- PBS lyase HEAT-like repeat domain-containing protein
- PBS lyase HEAT-like repeat domain protein
- PBS lyase HEAT-like repeat family protein
- PBS lyase HEAT-like repeat protein
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 4142283..4143409
- synteny block?: BlockID0029170
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1383
08BA02176:
C248_1469
11819-97:
MS7_1385 (cvfC)
6850:
RSAU_001308
71193:
ST398NM01_1430
ECT-R 2:
ECTR2_1285
ED133:
SAOV_1438c
ED98:
SAAV_1412
HO 5096 0412:
SAEMRSA15_12920
JH1:
SaurJH1_1518
JH9:
SaurJH9_1489
JKD6008:
SAA6008_01397 (nifU)
JKD6159:
SAA6159_01296 (nifU)
LGA251:
SARLGA251_13450 (cvfC)
M013:
M013TW_1375
MRSA252:
SAR1442
MSHR1132:
SAMSHR1132_12710
MSSA476:
SAS1372
Mu3:
SAHV_1417
Mu50:
SAV1429
MW2:
MW1319
RF122:
SAB1284c
ST398:
SAPIG1430
T0131:
SAT0131_01510 (pnpA)
TCH60:
HMPREF0772_11777
TW20:
SATW20_14300 (cvfC)
USA300_TCH1516:
USA300HOU_1366
VC40:
SAVC_06395
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MEILRIEPTPSPNTMKVVLSYTREDKLSNTYKKVEETQPRFINQLLSIDGITSIFHVMNF
N315 MEILRIEPTPSPNTMKVVLSYTREDKLSNTYKKVEETQPRFINQLLSIDGITSIFHVMNF
NCTC8325 MEILRIEPTPSPNTMKVVLSYTREDKLSNTYKKVEETQPRFINQLLSIDGITSIFHVMNF
Newman MEILRIEPTPSPNTMKVVLSYTREDKLSNTYKKVEETQPRFINQLLSIDGITSIFHVMNF
USA300_FPR3757 MEILRIEPTPSPNTMKVVLSYTREDKLSNTYKKVEETQPRFINQLLSIDGITSIFHVMNF
************************************************************
COL LAVDKAPKADWEVILPDIKAAFSDANKVLESVNEPQIDNHFGEIKAELLTFKGIPYQIKL
N315 LAVDKAPKADWEVILPDIKAAFSDANKVLESVNEPQIDNHFGEIKAELLTFKGIPYQIKL
NCTC8325 LAVDKAPKADWEVILPDIKAAFSDANKVLESVNEPQIDNHFGEIKAELLTFKGIPYQIKL
Newman LAVDKAPKADWEVILPDIKAAFSDANKVLESVNEPQIDNHFGEIKAELLTFKGIPYQIKL
USA300_FPR3757 LAVDKAPKADWEVILPDIKAAFSDANKVLESVNEPQIDNHFGEIKAELLTFKGIPYQIKL
************************************************************
COL TSADQELREQLPQTYVDHMTQAQTAHDNIVFMRKWLDLGNRYGNIQEVMDGVLEEVLATY
N315 TSADQELREQLPQTYVDHMTQAQTAHDNIVFMRKWLDLGNRYGNIEEVMDGVLEEVLATY
NCTC8325 TSADQELREQLPQTYVDHMTQAQTAHDNIVFMRKWLDLGNRYGNIQEVMDGVLEEVLATY
Newman TSADQELREQLPQTYVDHMTQAQTAHDNIVFMRKWLDLGNRYGNIQEVMDGVLEEVLATY
USA300_FPR3757 TSADQELREQLPQTYVDHMTQAQTAHDNIVFMRKWLDLGNRYGNIQEVMDGVLEEVLTTY
*********************************************:***********:**
COL PESQLPVLVKHALEENHATNNYHFYRHVSLDEYHATDNWKTRLRMLNHFPKPTFEDIPLL
N315 PESQLPVLVKHALEENHATNNYHFYRHVSLDEYHATDNWKTRLRMLNHFPKPTFEDIPLL
NCTC8325 PESQLPVLVKHALEENHATNNYHFYRHVSLDEYHATDNWKTRLRMLNHFPKPTFEDIPLL
Newman PESQLPVLVKHALEENHATNNYHFYRHVSLDEYHATDNWKTRLRMLNHFPKPTFEDIPLL
USA300_FPR3757 PESQLPVLVKHALEENHATNNYHFYRHVSLDEYHATDNWKTRLRMLNHFPKPTFEDIPLL
************************************************************
COL DLALSDEKVPVRRQAIVLLGMIESKEILPYLYKGLRDKSPAVRRTAGDCISDLGYPEALP
N315 DLALSDEKVPVRRQAIVLLGMIESKEILPYLYKGLRDKSPAVRRTAGDCISDLGYPEALP
NCTC8325 DLALSDEKVPVRRQAIVLLGMIESKEILPYLYKGLRDKSPAVRRTAGDCISDLGYPEALP
Newman DLALSDEKVPVRRQAIVLLGMIESKEILPYLYKGLRDKSPAVRRTAGDCISDLGYPEALP
USA300_FPR3757 DLALSDEKVPVRRQAIVLLGMIESKEILPYLYKGLRDKSPVVRRTAGDCISDLGYPEALP
****************************************.*******************
COL EMVLLLDDPQKIVRWRAAMFIFDEGNAEQLPALKAHINDNAFEVKLQIEMAISRIENGDE
N315 EMVLLLDDPQKIVRWRAAMFIFDEGNAEQLPALKAHINDNAFEVKLQIEMAISRIENGDE
NCTC8325 EMVLLLDDPQKIVRWRAAMFIFDEGNAEQLPALKAHINDNAFEVKLQIEMAISRIENGDE
Newman EMVLLLDDPQKIVRWRAAMFIFDEGNAEQLPALKAHINDNAFEVKLQIEMAISRIENGDE
USA300_FPR3757 EMVLLLDDPQKIVRWRAAMFIFDEGNAEQLPALKAHINDNAFEVKLQIEMAISRIENGDE
************************************************************
COL ALGSVWKQMANRTI
N315 ALGSVWKQMANRTI
NCTC8325 ALGSVWKQMANRTI
Newman ALGSVWKQMANRTI
USA300_FPR3757 ALGSVWKQMANRTI
**************