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⊟Summary[edit | edit source]
- pan ID?: SAUPAN003572000
- symbol?: truB
- synonym:
- description?: tRNA pseudouridine synthase B
- tRNA pseudouridine synthase B
- tRNA pseudouridine(55) synthase TruB
- putative tRNA pseudouridine synthase B
- tRNA pseudouridine 55 synthase
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 3909739..3910656
- synteny block?: BlockID0026490
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1229 (truB)
08BA02176:
C248_1304
11819-97:
MS7_1229 (truB)
6850:
RSAU_001154 (truB)
71193:
ST398NM01_1273
ECT-R 2:
ECTR2_1127 (truB)
ED133:
SAOV_1273 (truB)
ED98:
SAAV_1246 (truB)
HO 5096 0412:
SAEMRSA15_11040
JH1:
SaurJH1_1357
JH9:
SaurJH9_1331
JKD6008:
SAA6008_01226 (truB)
JKD6159:
SAA6159_01126 (truB)
LGA251:
SARLGA251_11820
M013:
M013TW_1211
MRSA252:
SAR1247
MSHR1132:
SAMSHR1132_11140
MSSA476:
SAS1205
Mu3:
SAHV_1261 (truB)
Mu50:
SAV1271 (truB)
MW2:
MW1154 (truB)
RF122:
SAB1133 (truB)
ST398:
SAPIG1273 (truB)
T0131:
SAT0131_01325
TCH60:
HMPREF0772_11958 (truB)
TW20:
SATW20_12650
USA300_TCH1516:
USA300HOU_1203 (truB)
VC40:
SAVC_05520
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MYNGILPVYKERGLTSHDVVFKLRKILKTKKIGHTGTLDPEVAGVLPVCIGNATRVSDYV
N315 MYNGILPVYKERGLTSHDVVFKLRKILKTKKIGHTGTLDPEVAGVLPVCIGNATRVSDYV
NCTC8325 MYNGILPVYKERGLTSHDVVFKLRKILKTKKIGHTGTLDPEVAGVLPVCIGNATRVSDYV
Newman MYNGILPVYKERGLTSHDVVFKLRKILKTKKIGHTGTLDPEVAGVLPVCIGNATRVSDYV
USA300_FPR3757 MYNGILPVYKERGLTSHDVVFKLRKILKTKKIGHTGTLDPEVAGVLPVCIGNATRVSDYV
************************************************************
COL MDMGKAYEATVSIGRSTTTEDQTGDTLETKGVHSADFNKDDIDRLLESFKGIIEQIPPMY
N315 MDMGKAYEATVSIGRSTTTEDQTGDTLETKGVHSADFNKDDIDRLLENFKGVIEQIPPMY
NCTC8325 MDMGKAYEATVSIGRSTTTEDQTGDTLETKGVHSADFNKDDIDRLLESFKGIIEQIPPMY
Newman MDMGKAYEATVSIGRSTTTEDQTGDTLETKGVHSADFNKDDIDRLLESFKGIIEQIPPMY
USA300_FPR3757 MDMGKAYEATVSIGRSTTTEDQTGDTLETKGVHSADFNKDDIDRLLESFKGIIEQIPPMY
***********************************************.***:********
COL SSVKVNGKKLYEYARNNETVERPKRKVNIKDIGRISELDFKENECHFKIRVICGKGTYIR
N315 SSVKVNGKKLYEYARNNETVERPKRKVNIKDIGRISELDFKENECHFKIRVICGKGTYIR
NCTC8325 SSVKVNGKKLYEYARNNETVERPKRKVNIKDIGRISELDFKENECHFKIRVICGKGTYIR
Newman SSVKVNGKKLYEYARNNETVERPKRKVNIKDIGRISELDFKENECHFKIRVICGKGTYIR
USA300_FPR3757 SSVKVNGKKLYEYARNNETVERPKRKVNIKDIGRISELDFKENECHFKIRVICGKGTYIR
************************************************************
COL TLATDIGVKLGFPAHMSKLTRIESGGFVLKDSLTLEQIKELHEQDSLQNKLFPLEYGLKG
N315 TLATDIGVKLGFPAHMSKLTRIESGGFVLKDSLTLEQIKELHEQDSLQNKLFPLEYGLKG
NCTC8325 TLATDIGVKLGFPAHMSKLTRIESGGFVLKDSLTLEQIKELHEQDSLQNKLFPLEYGLKG
Newman TLATDIGVKLGFPAHMSKLTRIESGGFVLKDSLTLEQIKELHEQDSLQNKLFPLEYGLKG
USA300_FPR3757 TLATDIGVKLGFPAHMSKLTRIESGGFVLKDSLTLEQIKELHEQDSLQNKLFPLEYGLKG
************************************************************
COL LPSIKIKDSHIKKRILNGQKFNKNEFDNKIKDQIVFIDDDSEKVLAIYMVHPTKESEIKP
N315 LPSIKIKDSHIKKRILNGQKFNKNEFDNKIKDQIVFIDDDSEKVLAIYMVHPTKESEIKP
NCTC8325 LPSIKIKDSHIKKRILNGQKFNKNEFDNKIKDQIVFIDDDSEKVLAIYMVHPTKESEIKP
Newman LPSIKIKDSHIKKRILNGQKFNKNEFDNKIKDQIVFIDDDSEKVLAIYMVHPTKESEIKP
USA300_FPR3757 LPSIKIKDSHIKKRILNGQKFNKNEFDNKIKDQIVFIDDDSEKVLAIYMVHPTKESEIKP
************************************************************
COL KKVFN
N315 KKVFN
NCTC8325 KKVFN
Newman KKVFN
USA300_FPR3757 KKVFN
*****