PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN003571000
• symbol^?: rbfA
• synonym:
• description^?: ribosome-binding factor A

  descriptions from strain specific annotations:

  • ribosome-binding factor A
  • 30S ribosome-binding factor RbfA
  • putative ribosome-binding factor A
  • ribosome-binding factor A (P15B PROTEIN)
• strand^?: +
• coordinates^?: 3909175..3909567
• synteny block^?: BlockID0026480
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL1289 (rbfA)
N315:
SA1113 (rbfA)
NCTC8325:
SAOUHSC_01247 (rbfA)
Newman:
NWMN_1179 (rbfA)
USA300_FPR3757:
SAUSA300_1163 (rbfA)
04-02981:
SA2981_1228 (rbfA)
08BA02176:
C248_1303 (rbfA)
11819-97:
MS7_1228 (rbfA)
6850:
RSAU_001153 (rbfA)
71193:
ST398NM01_1272
ECT-R 2:
ECTR2_1126 (rbfA)
ED133:
SAOV_1272 (rbfA)
ED98:
SAAV_1245 (rbfA)
HO 5096 0412:
SAEMRSA15_11030 (rbfA)
JH1:
SaurJH1_1356 (rbfA)
JH9:
SaurJH9_1330 (rbfA)
JKD6008:
SAA6008_01225 (rbfA)
JKD6159:
SAA6159_01125 (rbfA)
LGA251:
SARLGA251_11810 (rbfA)
M013:
M013TW_1210
MRSA252:
SAR1246 (rbfA)
MSHR1132:
SAMSHR1132_11130
MSSA476:
SAS1204 (rbfA)
Mu3:
SAHV_1260 (rbfA)
Mu50:
SAV1270 (rbfA)
MW2:
MW1153 (rbfA)
RF122:
SAB1132 (rbfA)
ST398:
SAPIG1272 (rbfA)
T0131:
SAT0131_01324
TCH60:
HMPREF0772_11959 (rbfA)
TW20:
SATW20_12640 (rbfA)
USA300_TCH1516:
USA300HOU_1202 (rbfA)
VC40:
SAVC_05515 (rbfA)

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             --------------MSSMRAERVGEQMKKELMDIINNKVKDPRVGFITITDVVLTNDLSQ
  N315            --------------MSSMRAERVGEQMKKELMDIINNKVKDPRVGFITITDVVLTNDLSQ
  NCTC8325        --------------MSSMRAERVGEQMKKELMDIINNKVKDPRVGFITITDVVLTNDLSQ
  Newman          MQITIELKDKEVTRMSSMRAERVGEQMKKELMDIINNKVKDPRVGFITITDVVLTNDLSQ
  USA300_FPR3757  --------------MSSMRAERVGEQMKKELMDIINNKVKDPRVGFITITDVVLTNDLSQ
                                **********************************************
  
  COL             AKVFLTVLGNDKEVENTFKALDKAKGFIKSELGSRMRLRIMPELMYEYDQSIEYGNKIER
  N315            AKVFLTVLGNDKEVENTFKALDKAKGFIKSELGSRMRLRIMPELMYEYDQSIEYGNKIER
  NCTC8325        AKVFLTVLGNDKEVENTFKALDKAKGFIKSELGSRMRLRIMPELMYEYDQSIEYGNKIER
  Newman          AKVFLTVLGNDKEVENTFKALDKAKGFIKSELGSRMRLRIMPELMYEYDQSIEYGNKIER
  USA300_FPR3757  AKVFLTVLGNDKEVENTFKALDKAKGFIKSELGSRMRLRIMPELMYEYDQSIEYGNKIER
                  ************************************************************
  
  COL             MIQDLHKQDR
  N315            MIQDLHKQDR
  NCTC8325        MIQDLHKQDR
  Newman          MIQDLHKQDR
  USA300_FPR3757  MIQDLHKQDR
                  **********