PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN003529000
• symbol^?: trmD
• synonym:
• description^?: tRNA (guanine-N(1)-)-methyltransferase

  descriptions from strain specific annotations:

  • tRNA (guanine-N(1)-)-methyltransferase
  • tRNA (guanosine(37)-N1)-methyltransferase TrmD
  • tRNA (Guanine-1)-methyltransferase
  • putative tRNA (guanine-7-)-methyltransferase
  • tRNA (Guanine37-N1) -methyltransferase
  • tRNA (guanine-N1)-methyltransferase
  • tRNA guanine-N(1)-methyltransferase
  • tRNA methyltransferase
• strand^?: +
• coordinates^?: 3868267..3869004
• synteny block^?: BlockID0026070
• occurrence^?: in 97% of 33 strains

⊟Orthologs

COL:
SACOL1256 (trmD)
N315:
SA1083 (trmD)
NCTC8325:
SAOUHSC_01210 (trmD)
Newman:
NWMN_1150 (trmD)
USA300_FPR3757:
SAUSA300_1133 (trmD)
04-02981:
SA2981_1198 (trmD)
08BA02176:
C248_1271 (trmD)
11819-97:
MS7_1198 (trmD)
6850:
RSAU_001122 (trmD)
71193:
ST398NM01_1240
ECT-R 2:
ECTR2_1096 (trmD)
ED133:
SAOV_1243 (trmD)
ED98:
SAAV_1213 (trmD)
HO 5096 0412:
SAEMRSA15_10730 (trmD)
JH1:
SaurJH1_1324 (trmD)
JH9:
SaurJH9_1299 (trmD)
JKD6008:
SAA6008_01195 (trmD)
JKD6159:
SAA6159_01093 (trmD)
LGA251:
SARLGA251_11510 (trmD)
M013:
M013TW_1178
MRSA252:
SAR1216 (trmD)
MSHR1132:
SAMSHR1132_10830
MSSA476:
SAS1174 (trmD)
Mu3:
SAHV_1230 (trmD)
Mu50:
SAV1240 (trmD)
MW2:
MW1123 (trmD)
RF122:
SAB1104 (trmD)
ST398:
SAPIG1240 (trmD)
T0131:
SAT0131_01290
TCH60:
HMPREF0772_11991 (trmD)
TW20:
SATW20_12340 (trmD)
USA300_TCH1516:
—
VC40:
SAVC_05365 (trmD)

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MKIDYLTLFPEMFDGVLNHSIMKRAQENNKLQINTVNFRDYAINKHNQVDDYPYGGGQGM
  N315            MKIDYLTLFPEMFDGVLNHSIMKRAQENNKLQINTVNFRDYAINKHNQVDDYPYGGGQGM
  NCTC8325        MKIDYLTLFPEMFDGVLNHSIMKRAQENNKLQINTVNFRDYAINKHNQVDDYPYGGGQGM
  Newman          MKIDYLTLFPEMFDGVLNHSIMKRAQENNKLQINTVNFRDYAINKHNQVDDYPYGGGQGM
  USA300_FPR3757  MKIDYLTLFPEMFDGVLNHSIMKRAQENNKLQINTVNFRDYAINKHNQVDDYPYGGGQGM
                  ************************************************************
  
  COL             VLKPEPVFNAMEDLDVTEQTRVILMCPQGEPFSHQKAVELSKADHIVFICGHYEGYDERI
  N315            VLKPEPVFNAMEDLDVTEQTRVILMCPQGEPFSHQKAVELSKADHIVFICGHYEGYDERI
  NCTC8325        VLKPEPVFNAMEDLDVTEQTRVILMCPQGEPFSHQKAVELSKADHIVFICGHYEGYDERI
  Newman          VLKPEPVFNAMEDLDVTEQTRVILMCPQGEPFSHQKAVELSKADHIVFICGHYEGYDERI
  USA300_FPR3757  VLKPEPVFNAMEDLDVTEQTRVILMCPQGEPFSHQKAVELSKADHIVFICGHYEGYDERI
                  ************************************************************
  
  COL             RTHLVTDEISMGDYVLTGGELPAMTMTDAIVRLIPGVLGNEQSHQDDSFSDGLLEFPQYT
  N315            RTHLVTDEISMGDYVLTGGELPAMTMTDAIVRLIPGVLGNEQSHQDDSFSDGLLEFPQYT
  NCTC8325        RTHLVTDEISMGDYVLTGGELPAMTMTDAIVRLIPGVLGNEQSHQDDSFSDGLLEFPQYT
  Newman          RTHLVTDEISMGDYVLTGGELPAMTMTDAIVRLIPGVLGNEQSHQDDSFSDGLLEFPQYT
  USA300_FPR3757  RTHLVTDEISMGDYVLTGGELPAMTMTDAIVRLIPGVLGNEQSHQDDSFSDGLLEFPQYT
                  ************************************************************
  
  COL             RPREFKGLTVPDVLLSGNHANIDAWRHEQKLIRTYNKRPDLIEKYPLTNADKQILERYKI
  N315            RPREFKGLTVPDVLLSGNHANIDAWRHEQKLIRTYNKRPDLIEKYPLTNEDKQILERYKI
  NCTC8325        RPREFKGLTVPDVLLSGNHANIDAWRHEQKLIRTYNKRPDLIEKYPLTNADKQILERYKI
  Newman          RPREFKGLTVPDVLLSGNHANIDAWRHEQKLIRTYNKRPDLIEKYPLTNADKQILERYKI
  USA300_FPR3757  RPREFKGLTVPDVLLSGNHANIDAWRHEQKLIRTYNKRPDLIEKYPLTNADKQILERYKI
                  ************************************************* **********
  
  COL             GLKKG
  N315            GLKKG
  NCTC8325        GLKKG
  Newman          GLKKG
  USA300_FPR3757  GLKKG
                  *****