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⊟Summary[edit | edit source]
- pan ID?: SAUPAN002802000
- symbol?: cspC
- synonym:
- description?: cold-shock protein
- cold-shock protein
- cold-shock protein C
- cold-shock protein CSD family protein
- CSD family cold shock protein
- Cold shock protein CspC
- cold-shock DNA-binding domain-containing protein
- cold-shock DNA-binding domain protein, CspC
- Cold-shock DNA-binding protein family
- cold shock protein CspA
- DNA-binding cold-shock protein
- putative cold shock protein
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 3269928..3270128
- synteny block?: BlockID0019930
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_0771 (cspC)
08BA02176:
C248_0886 (cspC)
11819-97:
MS7_0844
6850:
RSAU_000770 (cspC)
71193:
ST398NM01_0873
ECT-R 2:
ECTR2_744
ED133:
SAOV_0833 (cspC)
ED98:
SAAV_0762
HO 5096 0412:
SAEMRSA15_07190 (cspC)
JH1:
SaurJH1_0833
JH9:
SaurJH9_0817
JKD6008:
SAA6008_00808 (cspC)
JKD6159:
SAA6159_00748 (cspC)
LGA251:
SARLGA251_07240 (cspC)
M013:
M013TW_0783
MRSA252:
SAR0848 (cspC)
MSHR1132:
SAMSHR1132_07410
MSSA476:
SAS0757
Mu3:
SAHV_0812 (cspC)
Mu50:
SAV0816 (cspC)
MW2:
MW0770 (cspC)
RF122:
SAB0749 (cspC)
ST398:
SAPIG0873
T0131:
SAT0131_00893 (groEL)
TCH60:
HMPREF0772_12386 (cspA2)
TW20:
SATW20_08670 (cspC)
USA300_TCH1516:
USA300HOU_0824 (csp)
VC40:
SAVC_03610
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MNNGTVKWFNAEKGFGFIEREDGSDVFVHFSAIAEDGYKSLEEGQKVEFDIVEGDRGEQA
N315 MNNGTVKWFNAEKGFGFIEREDGSDVFVHFSAIAEDGYKSLEEGQKVEFDIVEGDRGEQA
NCTC8325 MNNGTVKWFNAEKGFGFIEREDGSDVFVHFSAIAEDGYKSLEEGQKVEFDIVEGDRGEQA
Newman MNNGTVKWFNAEKGFGFIEREDGSDVFVHFSAIAEDGYKSLEEGQKVEFDIVEGDRGEQA
USA300_FPR3757 MNNGTVKWFNAEKGFGFIEREDGSDVFVHFSAIAEDGYKSLEEGQKVEFDIVEGDRGEQA
************************************************************
COL ANVVKM
N315 ANVVKM
NCTC8325 ANVVKM
Newman ANVVKM
USA300_FPR3757 ANVVKM
******