Jump to navigation
Jump to search
⊟Summary[edit | edit source]
- pan ID?: SAUPAN002631000
- symbol?: nrdF
- synonym:
- description?: ribonucleotide-diphosphate reductase subunit beta
- ribonucleotide-diphosphate reductase subunit beta
- class 1b ribonucleoside-diphosphate reductase subunit beta
- ribonucleotide-diphosphate reductase, beta subunit
- Ribonucleotide reductase of class Ib (aerobic), beta subunit
- ribonucleoside-diphosphate reductase, beta subunit
- Ribonucleoside-diphosphate reductase class Ib beta subunit
- ribonucleoside-diphosphate reductase subunit beta
- ribonucleoside-diphosphate reductase subunit beta (Ribonucleotide reductase small subunit)
- ribonucleotide reductase, small chain family protein
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 3135443..3136447
- synteny block?: BlockID0018660
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_0710
08BA02176:
C248_0819 (rir2)
11819-97:
MS7_0783
6850:
RSAU_000707 (nrdF)
71193:
ST398NM01_0809
ECT-R 2:
ECTR2_682
ED133:
SAOV_0768 (nrdF)
ED98:
SAAV_0694 (nrdF)
HO 5096 0412:
SAEMRSA15_06580 (rir2)
JH1:
SaurJH1_0773 (nrdF)
JH9:
SaurJH9_0756 (nrdF)
JKD6008:
SAA6008_00747 (nrdF)
JKD6159:
SAA6159_00687 (nrdF)
LGA251:
SARLGA251_06650 (rir2)
M013:
M013TW_0718
MRSA252:
SAR0786 (nrdF)
MSHR1132:
SAMSHR1132_06770
MSSA476:
SAS0697 (nrdF)
Mu3:
SAHV_0729 (nrdF)
Mu50:
SAV0732 (nrdF)
MW2:
MW0694 (nrdF)
RF122:
SAB0683 (nrdF)
ST398:
SAPIG0809
T0131:
SAT0131_00802
TCH60:
HMPREF0772_12452 (nrdF)
TW20:
SATW20_08070 (rir2)
USA300_TCH1516:
USA300HOU_0756 (nrdF)
VC40:
SAVC_03295 (nrdF)
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MIAVNWNTQEDMTNMFWRQNISQMWVETEFKVSKDIASWKTLSEAEQDTFKKALAGLTGL
N315 MIAVNWNTQEDMTNMFWRQNISQMWVETEFKVSKDIASWKTLSEAEQDTFKKALAGLTGL
NCTC8325 MIAVNWNTQEDMTNMFWRQNISQMWVETEFKVSKDIASWKTLSEAEQDTFKKALAGLTGL
Newman MIAVNWNTQEDMTNMFWRQNISQMWVETEFKVSKDIASWKTLSEAEQDTFKKALAGLTGL
USA300_FPR3757 MIAVNWNTQEDMTNMFWRQNISQMWVETEFKVSKDIASWKTLSEAEQDTFKKALAGLTGL
************************************************************
COL DTHQADDGMPLVMLHTTDLRKKAVYSFMAMMEQIHAKSYSHIFTTLLPSSETNYLLDEWV
N315 DTHQADDGMPLVMLHTTDLRKKAVYSFMAMMEQIHAKSYSHIFTTLLPSSETNYLLDEWV
NCTC8325 DTHQADDGMPLVMLHTTDLRKKAVYSFMAMMEQIHAKSYSHIFTTLLPSSETNYLLDEWV
Newman DTHQADDGMPLVMLHTTDLRKKAVYSFMAMMEQIHAKSYSHIFTTLLPSSETNYLLDEWV
USA300_FPR3757 DTHQADDGMPLVMLHTTDLRKKAVYSFMAMMEQIHAKSYSHIFTTLLPSSETNYLLDEWV
************************************************************
COL LEEPHLKYKSDKIVANYHKLWGKEASIYDQYMARVTSVFLETFLFFSGFYYPLYLAGQGK
N315 LEEPHLKYKSDKIVANYHKLWGKEASIYDQYMARVTSVFLETFLFFSGFYYPLYLAGQGK
NCTC8325 LEEPHLKYKSDKIVANYHKLWGKEASIYDQYMARVTSVFLETFLFFSGFYYPLYLAGQGK
Newman LEEPHLKYKSDKIVANYHKLWGKEASIYDQYMARVTSVFLETFLFFSGFYYPLYLAGQGK
USA300_FPR3757 LEEPHLKYKSDKIVANYHKLWGKEASIYDQYMARVTSVFLETFLFFSGFYYPLYLAGQGK
************************************************************
COL MTTSGEIIRKILLDESIHGVFTGLDAQHLRNELSESEKQKADQEMYKLLNDLYLNEESYT
N315 MTTSGEIIRKILLDESIHGVFTGLDAQHLRNELSESEKQKADQEMYKLLNDLYLNEESYT
NCTC8325 MTTSGEIIRKILLDESIHGVFTGLDAQHLRNELSESEKQKADQEMYKLLNDLYLNEESYT
Newman MTTSGEIIRKILLDESIHGVFTGLDAQHLRNELSESEKQKADQEMYKLLNDLYLNEESYT
USA300_FPR3757 MTTSGEIIRKILLDESIHGVFTGLDAQHLRNELSESEKQKADQEMYKLLNDLYLNEESYT
************************************************************
COL KMLYDDLGITEDVLNYVKYNGNKALSNLGFEPYFEEREFNPIIENALDTTTKNHDFFSVK
N315 KMLYDDLGITEDVLNYVKYNGNKALSNLGFEPYFEEREFNPIIENALDTTTKNHDFFSVK
NCTC8325 KMLYDDLGITEDVLNYVKYNGNKALSNLGFEPYFEEREFNPIIENALDTTTKNHDFFSVK
Newman KMLYDDLGITEDVLNYVKYNGNKALSNLGFEPYFEEREFNPIIENALDTTTKNHDFFSVK
USA300_FPR3757 KMLYDDLGITEDVLNYVKYNGNKALSNLGFEPYFEEREFNPIIENALDTTTKNHDFFSVK
************************************************************
COL GDGYVLALNVEALQDDDFVFDNK
N315 GDGYVLALNVEALQDDDFVFDNK
NCTC8325 GDGYVLALNVEALQDDDFVFDNK
Newman GDGYVLALNVEALQDDDFVFDNK
USA300_FPR3757 GDGYVLALNVEALQDDDFVFDNK
***********************