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⊟Summary[edit | edit source]
- pan ID?: SAUPAN002554000
- symbol?: ccpE
- synonym:
- description?: LysR family transcriptional regulator
- LysR family transcriptional regulator
- LysR family transcriptional regulator, putative
- LysR family regulatory protein
- bacterial regulatory helix-turn-helix , lysR family protein
- hydrogen peroxide-inducible genes activator
- LysR substrate-binding
- regulatory helix-turn-helix protein, lysR family protein
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 3067332..3068223
- synteny block?: BlockID0017900
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_0649 (lysR)
08BA02176:
C248_0757
11819-97:
MS7_0723
6850:
RSAU_000648
71193:
ST398NM01_0750
ECT-R 2:
ECTR2_624
ED133:
SAOV_0707
ED98:
SAAV_0635
HO 5096 0412:
SAEMRSA15_05980
JH1:
SaurJH1_0712
JH9:
SaurJH9_0696
JKD6008:
SAA6008_00689
JKD6159:
SAA6159_00626
LGA251:
SARLGA251_06050
M013:
M013TW_0659
MRSA252:
SAR0683
MSHR1132:
SAMSHR1132_06180
MSSA476:
SAS0637
Mu3:
SAHV_0669
Mu50:
SAV0672
MW2:
MW0634
RF122:
SAB0621
ST398:
SAPIG0750
T0131:
SAT0131_00743
TCH60:
HMPREF0772_12516
TW20:
SATW20_07470
USA300_TCH1516:
USA300HOU_0694
VC40:
SAVC_02990
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MKIEDYRLLITLDETKTLRKAAEILYISQPAVTQRLKAIENAFGVDIFIRTKKQLITTTE
N315 ------------------------------------------------------------
NCTC8325 MKIEDYRLLITLDETKTLRKAAEILYISQPAVTQRLKAIENAFGVDIFIRTKKQLITTTE
Newman MKIEDYRLLITLDETKTLRKAAEILYISQPAVTQRLKAIENAFGVDIFIRTKKQLITTTE
USA300_FPR3757 MKIEDYRLLITLDETKTLRKAAEILYISQPAVTQRLKAIENAFGVDIFIRTKKQLITTTE
COL GTMIIEHARDMLKRERLFFDKMQAHIGEVNGTISIGCSSLIGQTLLPEVLSLYNAQFPNV
N315 --MIIEHARDMLKRERLFFDKMQAHIGEVNGTISIGCSSLIGQTLLPEVLSLYNAQFPNV
NCTC8325 GTMIIEHARDMLKRERLFFDKMQAHIGEVNGTISIGCSSLIGQTLLPEVLSLYNAQFPNV
Newman GTMIIEHARDMLKRERLFFDKMQAHIGEVNGTISIGCSSLIGQTLLPEVLSLYNAQFPNV
USA300_FPR3757 GTMIIEHARDMLKRERLFFDKMQAHIGEVNGTISIGCSSLIGQTLLPEVLSLYNAQFPNV
**********************************************************
COL EIQVQVGSTEQIKANHRDYHVMITRGNKVMNLANTHLFNDDHYFIFPKNRRDDVTKLPFI
N315 EIQVQVGSTEQIKANHRDYHVMITRGNKVMNLANTHLFNDDHYFIFPKNRRDDVTKLPFI
NCTC8325 EIQVQVGSTEQIKANHRDYHVMITRGNKVMNLANTHLFNDDHYFIFPKNRRDDVTKLPFI
Newman EIQVQVGSTEQIKANHRDYHVMITRGNKVMNLANTHLFNDDHYFIFPKNRRDDVTKLPFI
USA300_FPR3757 EIQVQVGSTEQIKANHRDYHVMITRGNKVMNLANTHLFNDDHYFIFPKNRRDDVTKLPFI
************************************************************
COL EFQADPIYINQIKEWYNDNLEQDYHATITVDQVATCKEMLISGVGVTILPEIMMKNISKE
N315 EFQADPIYINQIKQWYNDNLEQDYHATITVDQVATCKEMLISGVGVTILPEIMMKNISKE
NCTC8325 EFQADPIYINQIKEWYNDNLEQDYHATITVDQVATCKEMLISGVGVTILPEIMMKNISKE
Newman EFQADPIYINQIKEWYNDNLEQDYHATITVDQVATCKEMLISGVGVTILPEIMMKNISKE
USA300_FPR3757 EFQADPIYINQIKEWYNDNLEQDYHATITVDQVATCKEMLISGVGVTILPEIMMKNISKE
*************:**********************************************
COL QFEFEKVEIDNEPLIRSTFMSYDPSMLQLPQVDSFVNLMASFVEQPKA
N315 QFEFEKVEIDNEPLIRSTFMSYDPSMLQLPQVDSFVNLMASFVEQPKA
NCTC8325 QFEFEKVEIDNEPLIRSTFMSYDPSMLQLPQVDSFVNLMASFVEQPKA
Newman QFEFEKVEIDNEPLIRSTFMSYDPSMLQLPQVDSFVNLMASFVEQPKA
USA300_FPR3757 QFEFEKVEIDNEPLIRSTFMSYDPSMLQLPQVDSFVNLMASFVEQPKA
************************************************