PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN002320000
• symbol^?: tuf
• synonym:
• description^?: elongation factor Tu

  descriptions from strain specific annotations:

  • elongation factor Tu
  • translation elongation factor Tu
  • elongation factor EF1A
  • protein translation elongation factor Tu (EF-TU)
  • translational elongation factor TU
• strand^?: +
• coordinates^?: 2838878..2840062
• synteny block^?: BlockID0016190
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL0594 (tuf)
N315:
SA0506 (tuf)
NCTC8325:
SAOUHSC_00530
Newman:
NWMN_0510 (tufA)
USA300_FPR3757:
SAUSA300_0533 (tuf)
04-02981:
SA2981_0525 (tufA)
08BA02176:
C248_0623 (tuf)
11819-97:
MS7_0538 (tuf)
6850:
RSAU_000500 (tuf)
71193:
ST398NM01_0623
ECT-R 2:
ECTR2_502 (tuf)
ED133:
SAOV_0583 (tuf)
ED98:
SAAV_0511 (tuf)
HO 5096 0412:
SAEMRSA15_04750 (tuf)
JH1:
SaurJH1_0585 (tuf)
JH9:
SaurJH9_0571 (tuf)
JKD6008:
SAA6008_00554 (tuf)
JKD6159:
SAA6159_00502 (tuf)
LGA251:
SARLGA251_04840 (tuf)
M013:
M013TW_0535
MRSA252:
SAR0553 (tuf)
MSHR1132:
SAMSHR1132_04920
MSSA476:
SAS0506 (tuf)
Mu3:
SAHV_0546 (tufA)
Mu50:
SAV0548 (tuf)
MW2:
MW0503 (tuf)
RF122:
SAB0499 (tuf)
ST398:
SAPIG0623 (tuf)
T0131:
SAT0131_00601
TCH60:
HMPREF0772_12641 (tuf)
TW20:
SATW20_06180 (tuf)
USA300_TCH1516:
USA300HOU_0541 (tufA)
VC40:
SAVC_02330

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MAKEKFDRSKEHANIGTIGHVDHGKTTLTAAIATVLAKNGDSVAQSYDMIDNAPEEKERG
  N315            MAKEKFDRSKEHANIGTIGHVDHGKTTLTAAIATVLAKNGDSVAQSYDMIDNAPEEKERG
  NCTC8325        MAKEKFDRSKEHANIGTIGHVDHGKTTLTAAIATVLAKNGDSVAQSYDMIDNAPEEKERG
  Newman          MAKEKFDRSKEHANIGTIGHVDHGKTTLTAAIATVLAKNGDSVAQSYDMIDNAPEEKERG
  USA300_FPR3757  MAKEKFDRSKEHANIGTIGHVDHGKTTLTAAIATVLAKNGDSVAQSYDMIDNAPEEKERG
                  ************************************************************
  
  COL             ITINTSHIEYQTDKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAADGPMPQTREHI
  N315            ITINTSHIEYQTDKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAADGPMPQTREHI
  NCTC8325        ITINTSHIEYQTDKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAADGPMPQTREHI
  Newman          ITINTSHIEYQTDKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAADGPMPQTREHI
  USA300_FPR3757  ITINTSHIEYQTDKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAADGPMPQTREHI
                  ************************************************************
  
  COL             LLSRNVGVPALVVFLNKVDMVDDEELLELVEMEVRDLLSEYDFPGDDVPVIAGSALKALE
  N315            LLSRNVGVPALVVFLNKVDMVDDEELLELVEMEVRDLLSEYDFPGDDVPVIAGSALKALE
  NCTC8325        LLSRNVGVPALVVFLNKVDMVDDEELLELVEMEVRDLLSEYDFPGDDVPVIAGSALKALE
  Newman          LLSRNVGVPALVVFLNKVDMVDDEELLELVEMEVRDLLSEYDFPGDDVPVIAGSALKALE
  USA300_FPR3757  LLSRNVGVPALVVFLNKVDMVDDEELLELVEMEVRDLLSEYDFPGDDVPVIAGSALKALE
                  ************************************************************
  
  COL             GDAQYEEKILELMEAVDTYIPTPERDSDKPFMMPVEDVFSITGRGTVATGRVERGQIKVG
  N315            GDAQYEEKILELMEAVDTYIPTPERDSDKPFMMPVEDVFSITGRGTVATGRVERGQIKVG
  NCTC8325        GDAQYEEKILELMEAVDTYIPTPERDSDKPFMMPVEDVFSITGRGTVATGRVERGQIKVG
  Newman          GDAQYEEKILELMEAVDTYIPTPERDSDKPFMMPVEDVFSITGRGTVATGRVERGQIKVG
  USA300_FPR3757  GDAQYEEKILELMEAVDTYIPTPERDSDKPFMMPVEDVFSITGRGTVATGRVERGQIKVG
                  ************************************************************
  
  COL             EEVEIIGLHDTSKTTVTGVEMFRKLLDYAEAGDNIGALLRGVAREDVQRGQVLAAPGSIT
  N315            EEVEIIGLHDTSKTTVTGVEMFRKLLDYAEAGDNIGALLRGVAREDVQRGQVLAAPGSIT
  NCTC8325        EEVEIIGLHDTSKTTVTGVEMFRKLLDYAEAGDNIGALLRGVAREDVQRGQVLAAPGSIT
  Newman          EEVEIIGLHDTSKTTVTGVEMFRKLLDYAEAGDNIGALLRGVAREDVQRGQVLAAPGSIT
  USA300_FPR3757  EEVEIIGLHDTSKTTVTGVEMFRKLLDYAEAGDNIGALLRGVAREDVQRGQVLAAPGSIT
                  ************************************************************
  
  COL             PHTEFKAEVYVLSKDEGGRHTPFFSNYRPQFYFRTTDVTGVVHLPEGTEMVMPGDNVEMT
  N315            PHTEFKAEVYVLSKDEGGRHTPFFSNYRPQFYFRTTDVTGVVHLPEGTEMVMPGDNVEMT
  NCTC8325        PHTEFKAEVYVLSKDEGGRHTPFFSNYRPQFYFRTTDVTGVVHLPEGTEMVMPGDNVEMT
  Newman          PHTEFKAEVYVLSKDEGGRHTPFFSNYRPQFYFRTTDVTGVVHLPEGTEMVMPGDNVEMT
  USA300_FPR3757  PHTEFKAEVYVLSKDEGGRHTPFFSNYRPQFYFRTTDVTGVVHLPEGTEMVMPGDNVEMT
                  ************************************************************
  
  COL             VELIAPIAIEDGTRFSIREGGRTVGSGVVTEIIK
  N315            VELIAPIAIEDGTRFSIREGGRTVGSGVVTEIIK
  NCTC8325        VELIAPIAIEDGTRFSIREGGRTVGSGVVTEIIK
  Newman          VELIAPIAIEDGTRFSIREGGRTVGSGVVTEIIK
  USA300_FPR3757  VELIAPIAIEDGTRFSIREGGRTVGSGVVTEIIK
                  **********************************