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⊟Summary[edit | edit source]
- pan ID?: SAUPAN002300000
- symbol?: —
- synonym:
- description?: 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB
- 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB
- RNA methyltransferase
- tRNA/rRNA methyltransferase, TrmH family, putative
- 23S rRNA Gm2251-methyltransferase
- Putative trmH family tRNA/rRNA methyltransferase
- RNA 2'-O ribose methyltransferase substrate binding family protein
- RNA methyltransferase, TrmH family
- RNA methyltransferase, TrmH family, group 3
- SpoU rRNA methylase family protein
- TrmH family RNA methyltransferase
- TrmH family tRNA/rRNA methyltransferase YacO
- tRNA/rRNA methyltransferase
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 2821022..2821768
- synteny block?: BlockID0015990
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_0507
08BA02176:
C248_0605 (yacO)
11819-97:
MS7_0521
6850:
RSAU_000483
71193:
ST398NM01_0607
ECT-R 2:
ECTR2_485
ED133:
SAOV_0567
ED98:
SAAV_0493
HO 5096 0412:
SAEMRSA15_04580 (yacO)
JH1:
SaurJH1_0568
JH9:
SaurJH9_0554
JKD6008:
SAA6008_00538 (yacO)
JKD6159:
SAA6159_00485 (yacO)
LGA251:
SARLGA251_04670 (yacO)
M013:
M013TW_0516
MRSA252:
SAR0535 (yacO)
MSHR1132:
SAMSHR1132_04760
MSSA476:
SAS0489
Mu3:
SAHV_0529
Mu50:
SAV0531
MW2:
MW0487
RF122:
SAB0482
ST398:
SAPIG0607
T0131:
SAT0131_00584 (bsaE)
TCH60:
HMPREF0772_12658 (rlmB)
TW20:
SATW20_06010 (yacO)
USA300_TCH1516:
USA300HOU_0525
VC40:
SAVC_02245
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MEDTVIVGRHAVREAIITGHPINKILIQEGIKKQQINEILKNAKDQKIIVQTVPKSKLDF
N315 MEDTVIVGRHAVREAIITGHPINKILIQEGIKKQQINEILKNAKDQKIIVQTVPKSKLDF
NCTC8325 MEDTVIVGRHAVREAIITGHPINKILIQEGIKKQQINEILKNAKDQKIIVQTVPKSKLDF
Newman MEDTVIVGRHAVREAIITGHPINKILIQEGIKKQQINEILKNAKDQKIIVQTVPKSKLDF
USA300_FPR3757 MEDTVIVGRHAVREAIITGHPINKILIQEGIKKQQINEILKNAKDQKIIVQTVPKSKLDF
************************************************************
COL LANAPHQGVAALIAPYEYADFDQFLKQQKEKEGLLTVLILDGLEDPHNLGSILRTADATG
N315 LANAPHQGVAALIAPYEYADFDQFLKQQKEKEGLSTVLILDGLEDPHNLGSILRTADATG
NCTC8325 LANAPHQGVAALIAPYEYADFDQFLKQQKEKEGLLTVLILDGLEDPHNLGSILRTADATG
Newman LANAPHQGVAALIAPYEYADFDQFLKQQKEKEGLLTVLILDGLEDPHNLGSILRTADATG
USA300_FPR3757 LANAPHQGVAALIAPYEYADFDQFLKQQKEKEGLLTVLILDGLEDPHNLGSILRTADATG
********************************** *************************
COL VDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVTNLAKTIDELKDNGFWVAGTEANNAT
N315 VDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVTNLAKTIDELKDNGFWVAGTEANNAT
NCTC8325 VDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVTNLAKTIDELKDNGFWVAGTEANNAT
Newman VDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVTNLAKTIDELKDNGFWVAGTEANNAT
USA300_FPR3757 VDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVTNLAKTIDELKDNGFWVAGTEANNAT
************************************************************
COL DYRNLEADMSLAIVIGSEGQGMSRLVSDKCDFYIKIPMVGHVNSLNASVAASLMMYEVFR
N315 DYRNLEADMSLAIVIGSEGQGMSRLVSDKCDFYIKIPMVGHVNSLNASVAASLMMYEVFR
NCTC8325 DYRNLEADMSLAIVIGSEGQGMSRLVSDKCDFYIKIPMVGHVNSLNASVAASLMMYEVFR
Newman DYRNLEADMSLAIVIGSEGQGMSRLVSDKCDFYIKIPMVGHVNSLNASVAASLMMYEVFR
USA300_FPR3757 DYRNLEADMSLAIVIGSEGQGMSRLVSDKCDFYIKIPMVGHVNSLNASVAASLMMYEVFR
************************************************************
COL KRHDVGEI
N315 KRHDVGEI
NCTC8325 KRHDVGEI
Newman KRHDVGEI
USA300_FPR3757 KRHDVGEI
********