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⊟Summary[edit | edit source]
- pan ID?: SAUPAN002283000
- symbol?: pdxS
- synonym:
- description?: pyridoxal 5'-phosphate synthase lyase subunit PdxS
- pyridoxal 5'-phosphate synthase lyase subunit PdxS
- pyridoxal biosynthesis lyase PdxS
- pyridoxal biosynthesis lyase PdxS, putative
- Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit
- pyridoxine biosynthesis protein
- putative pyridoxine biosynthesis protein
- pyridoxal 5'-phosphate synthase, synthase subunit Pdx1
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 2805595..2806483
- synteny block?: BlockID0015820
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_0494
08BA02176:
C248_0590
11819-97:
MS7_0508
6850:
RSAU_000470 (pdxS)
71193:
ST398NM01_0594
ECT-R 2:
ECTR2_472
ED133:
SAOV_0554
ED98:
SAAV_0480
HO 5096 0412:
SAEMRSA15_04450
JH1:
SaurJH1_0555
JH9:
SaurJH9_0541
JKD6008:
SAA6008_00525 (pdxS)
JKD6159:
SAA6159_00472 (pdxS)
LGA251:
SARLGA251_04530
M013:
M013TW_0503
MRSA252:
SAR0522
MSHR1132:
SAMSHR1132_04630
MSSA476:
SAS0476
Mu3:
SAHV_0516
Mu50:
SAV0519
MW2:
MW0474
RF122:
SAB0469
ST398:
SAPIG0594
T0131:
SAT0131_00568
TCH60:
HMPREF0772_12672
TW20:
SATW20_05870
USA300_TCH1516:
USA300HOU_0511
VC40:
SAVC_02180
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MSKIIGSDRVKRGMAEMQKGGVIMDVVNAEQARIAEEAGAVAVMALERVPSDIRAAGGVA
N315 MSKIIGSDRVKRGMAEMQKGGVIMDVVNAEQARIAEEAGAVAVMALERVPSDIRAAGGVA
NCTC8325 MSKIIGSDRVKRGMAEMQKGGVIMDVVNAEQARIAEEAGAVAVMALERVPSDIRAAGGVA
Newman MSKIIGSDRVKRGMAEMQKGGVIMDVVNAEQARIAEEAGAVAVMALERVPSDIRAAGGVA
USA300_FPR3757 MSKIIGSDRVKRGMAEMQKGGVIMDVVNAEQARIAEEAGAVAVMALERVPSDIRAAGGVA
************************************************************
COL RMANPKIVEEVMNAVSIPVMAKARIGHITEARVLEAMGVDYIDESEVLTPADEEYHLRKD
N315 RMANPKIVEEVMNAVSIPVMAKARIGHITEARVLEAMGVDYIDESEVLTPADEEYHLRKD
NCTC8325 RMANPKIVEEVMNAVSIPVMAKARIGHITEARVLEAMGVDYIDESEVLTPADEEYHLRKD
Newman RMANPKIVEEVMNAVSIPVMAKARIGHITEARVLEAMGVDYIDESEVLTPADEEYHLRKD
USA300_FPR3757 RMANPKIVEEVMNAVSIPVMAKARIGHITEARVLEAMGVDYIDESEVLTPADEEYHLRKD
************************************************************
COL QFTVPFVCGCRNLGEAARRIGEGAAMLRTKGEPGTGNIVEAVRHMRQVNSEVSRLTVMND
N315 QFTVPFVCGCRNLGEAARRIGEGAAMLRTKGEPGTGNIVEAVRHMRQVNSEVSRLTVMND
NCTC8325 QFTVPFVCGCRNLGEAARRIGEGAAMLRTKGEPGTGNIVEAVRHMRQVNSEVSRLTVMND
Newman QFTVPFVCGCRNLGEAARRIGEGAAMLRTKGEPGTGNIVEAVRHMRQVNSEVSRLTVMND
USA300_FPR3757 QFTVPFVCGCRNLGEAARRIGEGAAMLRTKGEPGTGNIVEAVRHMRQVNSEVSRLTVMND
************************************************************
COL DEIMTFAKDIGAPYEILKQIKDNGRLPVVNFAAGGVATPQDAALMMELGADGVFVGSGIF
N315 DEIMTFAKDIGAPYEILKQIKDNGRLPVVNFAAGGVATPQDAALMMELGADGVFVGSGIF
NCTC8325 DEIMTFAKDIGAPYEILKQIKDNGRLPVVNFAAGGVATPQDAALMMELGADGVFVGSGIF
Newman DEIMTFAKDIGAPYEILKQIKDNGRLPVVNFAAGGVATPQDAALMMELGADGVFVGSGIF
USA300_FPR3757 DEIMTFAKDIGAPYEILKQIKDNGRLPVVNFAAGGVATPQDAALMMELGADGVFVGSGIF
************************************************************
COL KSEDPEKFAKAIVQATTHYQDYELIGRLASELGTAMKGLDINQLSLEERMQERGW
N315 KSEDPEKFAKAIVQATTHYQDYELIGRLASELGTAMKGLDINQLSLEERMQERGW
NCTC8325 KSEDPEKFAKAIVQATTHYQDYELIGRLASELGTAMKGLDINQLSLEERMQERGW
Newman KSEDPEKFAKAIVQATTHYQDYELIGRLASELGTAMKGLDINQLSLEERMQERGW
USA300_FPR3757 KSEDPEKFAKAIVQATTHYQDYELIGRLASELGTAMKGLDINQLSLEERMQERGW
*******************************************************