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⊟Summary[edit | edit source]
- pan ID?: SAUPAN002260000
- symbol?: lysS
- synonym:
- description?: lysyl-tRNA synthetase
- lysyl-tRNA synthetase
- lysine--tRNA ligase
- asparaginyl-tRNA synthetase
- Lysyl-tRNA synthetase (class II)
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 2766551..2768123
- synteny block?: BlockID0015590
- occurrence?: in 97% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_0492 (lysS)
08BA02176:
C248_0574 (lysS)
11819-97:
MS7_0494 (lysS)
6850:
RSAU_000456 (lysS)
71193:
ST398NM01_0583
ECT-R 2:
ECTR2_457 (lysS)
ED133:
SAOV_0540
ED98:
SAAV_0465 (lysS)
HO 5096 0412:
SAEMRSA15_04430 (lysS)
JH1:
SaurJH1_0553 (lysS)
JH9:
SaurJH9_0539 (lysS)
JKD6008:
SAA6008_00522 (lysS)
JKD6159:
SAA6159_00468 (lysS)
LGA251:
SARLGA251_04510 (lysS)
M013:
M013TW_0489
MRSA252:
SAR0518 (lysS)
MSHR1132:
SAMSHR1132_04610
MSSA476:
SAS0474 (lysS)
Mu3:
SAHV_0514 (lysS)
Mu50:
SAV0517 (lysS)
MW2:
MW0472 (lysS)
RF122:
SAB0466 (lysS)
ST398:
SAPIG0583 (lysS)
T0131:
SAT0131_00564
TCH60:
HMPREF0772_10001 (lysS)
TW20:
SATW20_05850 (lysS)
USA300_TCH1516:
—
VC40:
SAVC_02170 (lysS)
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL --------------------MSEEMNDQMLVRRQKLQELYDLGIDPFGSKFDRSGLSSDL
N315 --------------------MSEEMNDQMLVRRQKLQELYDLGIDPFGSKFDRSGLSSDL
NCTC8325 --------------------MSEEMNDQMLVRRQKLQELYDLGIDPFGSKFDRSGLSSDL
Newman MFECTSWNTKGLQQVKGEKVMSEEMNDQMLVRRQKLQELYDLGIDPFGSKFDRSGLSSDL
USA300_FPR3757 --------------------MSEEMNDQMLVRRQKLQELYDLGIDPFGSKFDRSGLSSDL
****************************************
COL KEEWDQYSKEELVEKEADSHVAIAGRLMTKRGKGKAGFAHVQDLAGQIQIYVRKDQVGDD
N315 KEEWDQYSKEELVEKEADSHVAIAGRLMTKRGKGKAGFAHVQDLAGQIQIYVRKDQVGDD
NCTC8325 KEEWDQYSKEELVEKEADSHVAIAGRLMTKRGKGKAGFAHVQDLAGQIQIYVRKDQVGDD
Newman KEEWDQYSKEELVEKEADSHVAIAGRLMTKRGKGKAGFAHVQDLAGQIQIYVRKDQVGDD
USA300_FPR3757 KEEWDQYSKEELVEKEADSHVAIAGRLMTKRGKGKAGFAHVQDLAGQIQIYVRKDQVGDD
************************************************************
COL EFDLWKNADLGDIVGVEGVMFKTNTGELSVKAKKFTLLTKSLRPLPDKFHGLQDIEQRYR
N315 EFDLWKNADLGDIVGVEGVMFKTNTGELSVKAKKFTLLTKSLRPLPDKFHGLQDIEQRYR
NCTC8325 EFDLWKNADLGDIVGVEGVMFKTNTGELSVKAKKFTLLTKSLRPLPDKFHGLQDIEQRYR
Newman EFDLWKNADLGDIVGVEGVMFKTNTGELSVKAKKFTLLTKSLRPLPDKFHGLQDIEQRYR
USA300_FPR3757 EFDLWKNADLGDIVGVEGVMFKTNTGELSVKAKKFTLLTKSLRPLPDKFHGLQDIEQRYR
************************************************************
COL QRYLDLITNEDSTRTFINRSKIIQEMRNYLNNKGFLEVETPMMHQIAGGAAARPFVTHHN
N315 QRYLDLITNEDSTRTFINRSKIIQEMRNYLNNKGFLEVETPMMHQIAGGAAARPFVTHHN
NCTC8325 QRYLDLITNEDSTRTFINRSKIIQEMRNYLNNKGFLEVETPMMHQIAGGAAARPFVTHHN
Newman QRYLDLITNEDSTRTFINRSKIIQEMRNYLNNKGFLEVETPMMHQIAGGAAARPFVTHHN
USA300_FPR3757 QRYLDLITNEDSTRTFINRSKIIQEMRNYLNNKGFLEVETPMMHQIAGGAAARPFVTHHN
************************************************************
COL ALDATLYMRIAIELHLKRLIVGGLEKVYEIGRVFRNEGVSTRHNPEFTMIELYEAYADYH
N315 ALDATLYMRIAIELHLKRLIVGGLEKVYEIGRVFRNEGVSTRHNPEFTMIELYEAYADYH
NCTC8325 ALDATLYMRIAIELHLKRLIVGGLEKVYEIGRVFRNEGVSTRHNPEFTMIELYEAYADYH
Newman ALDATLYMRIAIELHLKRLIVGGLEKVYEIGRVFRNEGVSTRHNPEFTMIELYEAYADYH
USA300_FPR3757 ALDATLYMRIAIELHLKRLIVGGLEKVYEIGRVFRNEGVSTRHNPEFTMIELYEAYADYH
************************************************************
COL DIMDLTESMVRHIANEVLGSAKVQYNGETIDLESAWTRLHIVDAVKEATGVDFYEVKSDE
N315 DIMDLTESMVRHIANEVLGSAKVQYNGETIDLESAWTRLHIVDAVKEATGVDFYEVKSDE
NCTC8325 DIMDLTESMVRHIANEVLGSAKVQYNGETIDLESAWTRLHIVDAVKEATGVDFYEVKSDE
Newman DIMDLTESMVRHIANEVLGSAKVQYNGETIDLESAWTRLHIVDAVKEATGVDFYEVKSDE
USA300_FPR3757 DIMDLTESMVRHIANEVLGSAKVQYNGETIDLESAWTRLHIVDAVKEATGVDFYEVKSDE
************************************************************
COL EAKALAKEHGIEIKDTMKYGHILNEFFEQKVEETLIQPTFIYGHPTEISPLAKKNPEDPR
N315 EAKALAKEHGIEIKDTMKYGHILNEFFEQKVEETLIQPTFIYGHPTEISPLAKKNPEDPR
NCTC8325 EAKALAKEHGIEIKDTMKYGHILNEFFEQKVEETLIQPTFIYGHPTEISPLAKKNPEDPR
Newman EAKALAKEHGIEIKDTMKYGHILNEFFEQKVEETLIQPTFIYGHPTEISPLAKKNPEDPR
USA300_FPR3757 EAKALAKEHGIEIKDTMKYGHILNEFFEQKVEETLIQPTFIYGHPTEISPLAKKNPEDPR
************************************************************
COL FTDRFELFIVGREHANAFTELNDPIDQKGRFEAQLVEKAQGNDEAHEMDEDYIEALEYGM
N315 FTDRFELFIVGREHANAFTELNDPIDQKGRFEAQLVEKAQGNDEAHEMDEDYIEALEYGM
NCTC8325 FTDRFELFIVGREHANAFTELNDPIDQKGRFEAQLVEKAQGNDEAHEMDEDYIEALEYGM
Newman FTDRFELFIVGREHANAFTELNDPIDQKGRFEAQLVEKAQGNDEAHEMDEDYIEALEYGM
USA300_FPR3757 FTDRFELFIVGREHANAFTELNDPIDQKGRFEAQLVEKAQGNDEAHEMDEDYIEALEYGM
************************************************************
COL PPTGGLGIGIDRLVMLLTDSPSIRDVLLFPYMRQK
N315 PPTGGLGIGIDRLVMLLTDSPSIRDVLLFPYMRQK
NCTC8325 PPTGGLGIGIDRLVMLLTDSPSIRDVLLFPYMRQK
Newman PPTGGLGIGIDRLVMLLTDSPSIRDVLLFPYMRQK
USA300_FPR3757 PPTGGLGIGIDRLVMLLTDSPSIRDVLLFPYMRQK
***********************************