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⊟Summary[edit | edit source]
- pan ID?: SAUPAN002233000
- symbol?: ipk
- synonym:
- description?: 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
- 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
- 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 2741457..2742305
- synteny block?: BlockID0015320
- occurrence?: in 97% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_0470
08BA02176:
C248_0550
11819-97:
MS7_0472 (ispE)
6850:
RSAU_000432 (ispE)
71193:
ST398NM01_0561
ECT-R 2:
ECTR2_435 (ispE)
ED133:
SAOV_0517 (ispE)
ED98:
SAAV_0442 (ipk)
HO 5096 0412:
SAEMRSA15_04210
JH1:
SaurJH1_0529 (ipk)
JH9:
SaurJH9_0516 (ipk)
JKD6008:
SAA6008_00499 (ispE)
JKD6159:
SAA6159_00446 (ispE)
LGA251:
SARLGA251_04290 (ispE)
M013:
M013TW_0466
MRSA252:
SAR0496 (ipk)
MSHR1132:
SAMSHR1132_04390
MSSA476:
SAS0452 (ipk)
Mu3:
SAHV_0492 (ipk)
Mu50:
SAV0495 (ipk)
MW2:
MW0450 (ipk)
RF122:
SAB0444 (ipk)
ST398:
SAPIG0561 (ispE)
T0131:
SAT0131_00540 (tal)
TCH60:
HMPREF0772_10025 (ispE)
TW20:
SATW20_05630 (ispE)
USA300_TCH1516:
—
VC40:
SAVC_02060 (ipk)
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MIYETAPAKINFTLDTLFKRNDGYHEIEMIMTTVDLNDRLTFHKRKDRKIVVEIEHNYVP
N315 MIYETAPAKINFTLDTLFKRNDGYHEIEMIMTTVDLNDRLTFHKRKDRKIVVEIEHNYVP
NCTC8325 MIYETAPAKINFTLDTLFKRNDGYHEIEMIMTTVDLNDRLTFHKRKDRKIVVEIEHNYVP
Newman MIYETAPAKINFTLDTLFKRNDGYHEIEMIMTTVDLNDRLTFHKRKDRKIVVEIEHNYVP
USA300_FPR3757 MIYETAPAKINFTLDTLFKRNDGYHEIEMIMTTVDLNDRLTFHKRKDRKIVVEIEHNYVP
************************************************************
COL SNHKNLAYRAAQLFIEQYQLKQGVTISIDKEIPVSAGLAGGSADAAATLRGLNRLFDIGA
N315 SNHKNLAYRAAQLFIEQYQLKQGVTISIDKEIPVSAGLAGGSADAAATLRGLNRLFDIGA
NCTC8325 SNHKNLAYRAAQLFIEQYQLKQGVTISIDKEIPVSAGLAGGSADAAATLRGLNRLFDIGA
Newman SNHKNLAYRAAQLFIEQYQLKQGVTISIDKEIPVSAGLAGGSADAAATLRGLNRLFDIGA
USA300_FPR3757 SNHKNLAYRAAQLFIEQYQLKQGVTISIDKEIPVSAGLAGGSADAAATLRGLNRLFDIGA
************************************************************
COL SLEELALLGSKIGTDIPFCIYNKTALCTGRGEKIEFLNKPPSAWVILAKPNLGISSPDIF
N315 SLEELALLGSKIGTDIPFCIYNKTALCTGRGEKIEFLNKPPSAWVILAKPNLGISSPDIF
NCTC8325 SLEELALLGSKIGTDIPFCIYNKTALCTGRGEKIEFLNKPPSAWVILAKPNLGISSPDIF
Newman SLEELALLGSKIGTDIPFCIYNKTALCTGRGEKIEFLNKPPSAWVILAKPNLGISSPDIF
USA300_FPR3757 SLEELALLGSKIGTDIPFCIYNKTALCTGRGEKIEFLNKPPSAWVILAKPNLGISSPDIF
************************************************************
COL KLINLDKRYDVHTKMCYEALENRDYQQLCQSLSNRLEPISVSKHPQIDKLKNNMLKSGAD
N315 KLINLDKRYDVHTKMCYEALENRDYQQLCQSLSNRLEPISVSKHPQIDKLKNNMLKSGAD
NCTC8325 KLINLDKRYDVHTKMCYEALENRDYQQLCQSLSNRLEPISVSKHPQIDKLKNNMLKSGAD
Newman KLINLDKRYDVHTKMCYEALENRDYQQLCQSLSNRLEPISVSKHPQIDKLKNNMLKSGAD
USA300_FPR3757 KLINLDKRYDVHTKMCYEALENRDYQQLCQSLSNRLEPISVSKHPQIDKLKNNMLKSGAD
************************************************************
COL GALMSGSGPTVYGLARKESQAKNIYNAVNGCCNEVYLVRLLG
N315 GALMSGSGPTVYGLARKESQAKNIYNAVNGCCNEVYLVRLLG
NCTC8325 GALMSGSGPTVYGLARKESQAKNIYNAVNGCCNEVYLVRLLG
Newman GALMSGSGPTVYGLARKESQAKNIYNAVNGCCNEVYLVRLLG
USA300_FPR3757 GALMSGSGPTVYGLARKESQAKNIYNAVNGCCNEVYLVRLLG
******************************************