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⊟Summary[edit | edit source]
- pan ID?: SAUPAN002185000
- symbol?: gltC
- synonym:
- description?: LysR family transcriptional regulator
- LysR family transcriptional regulator
- transcription activator of glutamate synthase operon
- LysR family regulatory protein
- transcriptional activator of glutamate synthase operon
- transcriptional regulatory protein GltC
- bacterial regulatory helix-turn-helix , lysR family protein
- gltC, transcription activator of glutamatesynthase operon
- glutamate synthase operon transcriptional regulator
- regulatory helix-turn-helix protein, lysR family protein
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 2688256..2689140
- synteny block?: BlockID0014860
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_0446 (gltC)
08BA02176:
C248_0520
11819-97:
MS7_0444
6850:
RSAU_000404 (gltC)
71193:
ST398NM01_0536
ECT-R 2:
ECTR2_404
ED133:
SAOV_0488c
ED98:
SAAV_0413
HO 5096 0412:
SAEMRSA15_03960
JH1:
SaurJH1_0505
JH9:
SaurJH9_0492
JKD6008:
SAA6008_00474 (gltC)
JKD6159:
SAA6159_00420 (gltC)
LGA251:
SARLGA251_04040
M013:
M013TW_0435
MRSA252:
SAR0470
MSHR1132:
SAMSHR1132_04150
MSSA476:
SAS0428
Mu3:
SAHV_0468 (gltC)
Mu50:
SAV0471 (gltC)
MW2:
MW0425 (gltC)
RF122:
SAB0420c
ST398:
SAPIG0536
T0131:
SAT0131_00512 (glcA)
TCH60:
HMPREF0772_10052 (gltC)
TW20:
SATW20_05390
USA300_TCH1516:
USA300HOU_0471 (gltC)
VC40:
SAVC_01940
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MEIKQLRYFIEVAKREHISETALELNIAQSAISRQITLLEQELNVSLFKKQGRNITLTSE
N315 MEIKQLRYFIEVAKREHISETALELNIAQSAISRQITLLEQELNVSLFKKQGRNITLTSE
NCTC8325 MEIKQLRYFIEVAKREHISETALELNIAQSAISRQITLLEQELNVSLFKKQGRNITLTSE
Newman MEIKQLRYFIEVAKREHISETALELNIAQSAISRQITLLEQELNVSLFKKQGRNITLTSE
USA300_FPR3757 MEIKQLRYFIEVAKREHISETALELNIAQSAISRQITLLEQELNVSLFKKQGRNITLTSE
************************************************************
COL GKLLFNEALRIIEHLDSTIEQFQSHGLTKNKSIYIGYDESDVSHMLLPLIQTFHLQNDTH
N315 GKLLFNEALRIIEHLDSTIEQFQSHGLTKNKSIYIGYDESDVSHMLLPLIQTFHLQNDTH
NCTC8325 GKLLFNEALRIIEHLDSTIEQFQSHGLTKNKSIYIGYDESDVSHMLLPLIQTFHLQNDTH
Newman GKLLFNEALRIIEHLDSTIEQFQSHGLTKNKSIYIGYDESDVSHMLLPLIQTFHLQNDTH
USA300_FPR3757 GKLLFNEALRIIEHLDSTIEQFQSHGLTKNKSIYIGYDESDVSHMLLPLIQTFHLQNDTH
************************************************************
COL VIPSLLEHDTIINSVLNGNIDIGFTELTPEIRKHKQLNMLPLFEEHYHLYAPSDDPITMA
N315 VIPSLLDHDTIINSVLNGNIDIGFTELTPEIRKHKQLHMLPLFEEHYHLYAPSDDPITMA
NCTC8325 VIPSLLEHDTIINSVLNGNIDIGFTELTPEIRKHKQLHMLPLFEEHYHLYAPSDDPITMA
Newman VIPSLLEHDTIINSVLNGNIDIGFTELTPEIRKHKQLHMLPLFEEHYHLYAPSDDPITMA
USA300_FPR3757 VIPSLLEHDTIINSVLNGNIDIGFTELTPEIRKHKQLHMLPLFEEHYHLYAPSDDPITMA
******:******************************:**********************
COL THPPLIQFEHSHIYCLAPFAETVKKQLRKITKSDVYTISSQPLAQYLLRQKEGYIISSQN
N315 THPPLIQFEHSHIYCLAPFAETVKKQLRKITKSDVYTISSQPLAQYLLRQKEGYIISSQN
NCTC8325 THPPLIQFEHSHIYCLAPFAETVKKQLRKITKSDVYTISSQPLAQYLLRQKEGYIISSQN
Newman THPPLIQFEHSHIYCLAPFAETVKKQLRKITKSDVYTISSQPLAQYLLRQKEGYIISSQN
USA300_FPR3757 THPPLIQFEHSHIYCLAPFAETVKKQLRKITKSDVYTISSQPLAQYLLRQKEGYIISSQN
************************************************************
COL IHLPESKSWIDIKLDHTELKRTICAITKEPYTKSDIGILLTLIQQLMTKTSTFH
N315 IHLPESKSWIDIKLDHTELKRTICAITKEPYTKSDIGILLTLIQQLMTKTSTFH
NCTC8325 IHLPESKSWIDIKLDHTELKRTICAITKEPYTKSDIGILLTLIQQLMTKTSTFH
Newman IHLPESKSWIDIKLDHTELKRTICAITKEPYTKSDIGILLTLIQQLMTKTSTFH
USA300_FPR3757 IHLPESKSWIDIKLDHTELKRTICAITKEPYTKSDIGILLTLIQQLMTKTSTFH
******************************************************