PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN002139000
• symbol^?: lpl5
• synonym:
• description^?: tandem-type lipoprotein

  descriptions from strain specific annotations:

  • tandem-type lipoprotein
  • tandem lipoprotein
  • staphylococcal tandem lipoprotein
  • putative lipoprotein
  • staphylococcus tandem lipoproteins family protein
  • Tandem lipoprotein within Pathogenicity island 2
• strand^?: +
• coordinates^?: 2642051..2642846
• synteny block^?: BlockID0014450
• occurrence^?: in 42% of 33 strains

⊟Orthologs

COL:
SACOL0482
N315:
SA0398 (lpl3)
NCTC8325:
—
Newman:
NWMN_0408 (lpl5nm)
USA300_FPR3757:
SAUSA300_0415 (lpl3)
04-02981:
SA2981_0414 (lpl3)
08BA02176:
—
11819-97:
—
6850:
RSAU_000373
71193:
—
ECT-R 2:
ECTR2_373
ED133:
—
ED98:
SAAV_0381
HO 5096 0412:
SAEMRSA15_03700
JH1:
SaurJH1_0473
JH9:
SaurJH9_0461
JKD6008:
—
JKD6159:
—
LGA251:
—
M013:
—
MRSA252:
—
MSHR1132:
—
MSSA476:
—
Mu3:
SAHV_0436 (lpl3)
Mu50:
SAV0438 (lpl3)
MW2:
—
RF122:
—
ST398:
—
T0131:
—
TCH60:
—
TW20:
—
USA300_TCH1516:
USA300HOU_0443
VC40:
—

⊟Genome Viewer

COL
N315
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             -MEYLKRLALLISVIILTIFIMGCDSQSDTAENPKEGSKEAQIKKSFSKTLDMYPIKNLE
  N315            MMGYSKRFALYISVMILIFAIAGCGKSDET----KEGSKEEQIKKSFAKTLDMYPIKNLE
  Newman          -MEYLKRLALLISVIILTIFIMGCDSQSDTAENPKEGSKEAQIKKSFSKTLDMYPIKNLE
  USA300_FPR3757  -MEYLKRLALLISVIILTIFIMGCDSQSDTAENPKEGSKEAQIKKSFSKTLDMYPIKNLE
                   * * **:** ***:** : * **....:*    ****** ******:************
  
  COL             DFYDKEGYRDGEFKKDDKGTWLIRSEIVKQPKGKVMKTRGMQLYINRNTETAKGFFVLKE
  N315            DLYDKEGYRDGEFKKGDKGTWVISSVMVKQPKGEIMKSRGMYLFLNRNTRTAKGYFIVDE
  Newman          DFYDKEGYRDGEFKKDDKGTWLIRSEIVKQPKGKVMKTRGMQLYINRNTETAKGFFVLKE
  USA300_FPR3757  DFYGKEGYRDGEFKKDDKGTWLIRSEIVKQPKGKVMKTRGMQLYINRNTETAKGFFVLKE
                  *:*.***********.*****:* * :******::**:*** *::****.****:*::.*
  
  COL             ISENNNRVNKDKEEKYEVKMVGNKIIPTEQINDEKIKKEIENFKFFVQYGNFKNFEKYNN
  N315            TSNDTLKKTEDKEKRYPVKMVNNKIVPIDPINDKGVKKEIENFKFFSQYGDFKELKNYKN
  Newman          ISENNNRVNKDKEEKYEVKMVGNKIIPTEQINDEKIKKEIENFKFFVQYGNFKNFEKYNN
  USA300_FPR3757  ISENNNRVNKDKEEKYEVKMVGNKIIPTEQINDEKIKKEIENFKFFVQYGNFKNFEKYNN
                   *::. : .:***::* ****.***:* : ***: :********** ***:**::::*:*
  
  COL             GEFSYNPEAPIYSAKYQLHNDDYNVRQLRKRYDISTKETPKLLLKGGGDLKNSSVGQNDI
  N315            GEVSYNSEAPIYSAKYQLKNNDYNVKQLRKRYDISTEKAPKLLLKGTGDLKGSSIGHKDI
  Newman          GEFSYNPEAPIYSAKYQLHNDDYNVRQLRKRYDISTKETPKLLLKGGGDLKNSSVGQNDI
  USA300_FPR3757  GEFSYNPEAPIYSAKYQLHNDDYNVRQLRKRYDISTKETPKLLLKGGGDLKNSSVGQNDI
                  **.***.***********:*:****:**********:::******* ****.**:*::**
  
  COL             EFTFVERKGENIYFNDSVEFIPSK--
  N315            EFTFVENQEENIFFTDSLEFTSSENY
  Newman          EFTFVERKGENIYFNDSVEFIPSK--
  USA300_FPR3757  EFTFVERKGENIYFNDSVEFIPSK--
                  ******.: ***:*.**:** .*: