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⊟Summary[edit | edit source]
- pan ID?: SAUPAN001990000
- symbol?: —
- synonym:
- description?: putative DNA-binding protein
- strand?: -
- coordinates?: 2455559..2456868
- synteny block?: BlockID0013430
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_0383
08BA02176:
C248_0441
11819-97:
MS7_0374
6850:
RSAU_000328
71193:
ST398NM01_0462
ECT-R 2:
ECTR2_344
ED133:
SAOV_0407c
ED98:
SAAV_0351
HO 5096 0412:
SAEMRSA15_03370
JH1:
SaurJH1_0443
JH9:
SaurJH9_0432
JKD6008:
SAA6008_00384
JKD6159:
SAA6159_00359
LGA251:
SARLGA251_03450
M013:
M013TW_0364
MRSA252:
SAR0403
MSHR1132:
SAMSHR1132_03560
MSSA476:
SAS0361
Mu3:
SAHV_0382
Mu50:
SAV0385
MW2:
MW0361
RF122:
SAB0335c
ST398:
SAPIG0462
T0131:
SAT0131_00417 (capB)
TCH60:
HMPREF0772_10109
TW20:
SATW20_04510
USA300_TCH1516:
USA300HOU_0408
VC40:
SAVC_01675
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MLTKEFAQRVELSEKQVRKIVQHLEERGYQLSKTEYRGREATDFKEEDIELFKDIADKVK
N315 MLTKEFAQRVELSEKQVRKIVQHLEERGYQLSKTEYRGREATDFKEEDIELFKDIADKVK
NCTC8325 MLTKEFAQRVELSEKQVRKIVQHLEERGYQLSKTEYRGREATDFKEEDIELFKDIADKVK
Newman MLTKEFAQRVELSEKQVRKIVQHLEERGYQLSKTEYRGREATDFKEEDIELFKDIADKVK
USA300_FPR3757 MLTKEFAQRVELSEKQVRKIVQHLEERGYQLSKTEYRGREATDFKEEDIELFKDIADKVK
************************************************************
COL QTNSYDLAFDELEKEKDFLQVIVKNDDKNLPTNQNVAQLVEDLRLEIQKMREERHLLGQM
N315 QTNSYDLAFDELEKEKDFLQVIVKNDDKNLPTNQNVAQLVEDLRLEIQKMREERHLLGQM
NCTC8325 QTNSYDLAFDELEKEKDFLQVIVKNDDKNLPTNQNVAQLVEDLRLEIQKMREERHLLGQM
Newman QTNSYDLAFDELEKEKDFLQVIVKNDDKNLPTNQNVAQLVEDLRLEIQKMREERHLLGQM
USA300_FPR3757 QTNSYDLAFDELEKEKDFLQVIVKNDDKNLPTNQNVAQLVEDLRLEIQKMREERHLLGQM
************************************************************
COL MNQVHQQQQELKELQNQLTSKIDSNSESLKAIQTSQEAIQEAQASQAKALAESTNKVEKN
N315 MNQVHQQQQELKELQNQLTSKIDSNSESLKAIQTSQEAIQEAQASQAKVLAESTNKVEKN
NCTC8325 MNQVHQQQQELKELQNQLTSKIDSNSESLKAIQTSQEAIQEAQASQAKALAESTNKVEKN
Newman MNQVHQQQQELKELQNQLTSKIDSNSESLKAIQTSQEAIQEAQASQAKALAESTNKVEKN
USA300_FPR3757 MNQVHQQQQELKELQNQLTSKIDSNSESLKAIQTSQEAIQEAQASQAKALAESTNKVEKN
************************************************.***********
COL AVTEDKADSKDSKVAGVNTSTDAKTDTKAENAGDGTATKVDKEDQISATEAIEKASVEQS
N315 AVTEDKADSKDSKVAGVNTSTDAKTDTKAENAGDGTATKVDKEDQISATEAIEKASVEQS
NCTC8325 AVTEDKADSKDSKVAGVNTSTDAKTDTKAENAGDGTATKVDKEDQISATEAIEKASVEQS
Newman AVTEDKADSKDSKVAGVNTSTDAKTDTKAENAGDGTATNVDKEDQISATEAIEKASVEQS
USA300_FPR3757 AVTEDKADSKDSKVAGVNTSTDAKTDTKAENAGDGTATKVDKEDQISATEAIEKASVEQS
**************************************:*********************
COL KNDNAAETSNKEATVDAEAQHDAEQQVAEAHAEASKQATSNDSLEAKAENDSTASQSEMS
N315 KNENAAETSNKEATVDADAQHDAEQQVAEAHAEASKQATSNDSLEAKAENDSTASQSEMS
NCTC8325 KNDNAAETSNKEATVDAEAQHDAEQQVAEAHAEASKQATSNDSLEAKAENDSTASQSEMS
Newman KNDNAAETSNKEATVDAEAQHDAEQQVAEAHAEASKQATSNDSLEAKAENDSTASQSEMS
USA300_FPR3757 KNDNAAETSNKEATVDAEAQHDAEQQVAEAHAEASKQATSNDSLEAKAENDSTASQSEMS
**:**************:******************************************
COL EPKPQEEKKGFFARLFNL
N315 EPKPQEEKKGFFARLFNL
NCTC8325 EPKPQEEKKGFFARLFNL
Newman EPKPQEEKKGFFARLFNL
USA300_FPR3757 EPKPQEEKKGFFARLFNL
******************