Jump to navigation
Jump to search
⊟Summary[edit | edit source]
- pan ID?: SAUPAN001907000
- symbol?: —
- synonym:
- description?: mechanosensitive ion channel protein MscS
- mechanosensitive ion channel protein MscS
- mechanosensitive ion channel family protein
- small-conductance mechanosensitive ion channel, putative
- Potassium efflux system KefA protein / Small-conductance mechanosensitive channel
- Mechanosensitive ion channel
- MscS family small conductance mechanosensitive ion channel protein
- transporter, small conductance mechanosensitive ion channel (MscS) family
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 2395152..2396033
- synteny block?: BlockID0012800
- occurrence?: in 100% of 34 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_0359 (kefA)
08BA02176:
C248_0418
11819-97:
MS7_0351
6850:
RSAU_000306 (mscS)
71193:
ST398NM01_0441
ECT-R 2:
ECTR2_322
ED133:
SAOV_0385
ED98:
SAAV_0329
HO 5096 0412:
SAEMRSA15_03160
JH1:
SaurJH1_0420
JH9:
SaurJH9_0409
JKD6008:
SAA6008_00338
JKD6159:
SAA6159_00335
LGA251:
SARLGA251_03230
M013:
M013TW_0340
MRSA252:
SAR0358
MSHR1132:
SAMSHR1132_03340
MSSA476:
SAS0337
Mu3:
SAHV_0358
Mu50:
SAV0361
MW2:
MW0337
RF122:
SAB0312
ST398:
SAPIG0441
T0131:
SAT0131_00369 (thrS)
TCH60:
HMPREF0772_10133
TW20:
SATW20_04290
USA300_TCH1516:
USA300HOU_0382
VC40:
SAVC_01555
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 | |
| JSNZ |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MNQVMNIISSLFEPLTKIETYENIATKIAMIVIYIIVALIVIKILNKMIEQGFKIQNKSK
N315 MDQVMSIISSLFEPLTKIETYENIATKIAMIVIYIIVALIVIKILNKMIEQGFKIQNKSK
NCTC8325 MNQVMNIISSLFEPLTKIETYENIATKIAMIVIYIIVALIVIKILNKMIEQGFKIQNKSK
Newman MNQVMNIISSLFEPLTKIETYENIATKIAMIVIYIIVALIVIKILNKMIEQGFKIQNKSK
USA300_FPR3757 MNQVMNIISSLFEPLTKIETYENIATKIAMIVIYIIVALIVIKILNKMIEQGFKIQNKSK
*:***.******************************************************
COL KSNKKRSKTLISLVQNVVKYIVWFIVITTILSKFGISVEGVIASAGVVGLAVGFGAQTIV
N315 KSNKKRSKTLISLVQNVVKYIVWFIVITTILSKFGISVEGVIASAGVVGLAVGFGAQTIV
NCTC8325 KSNKKRSKTLISLVQNVVKYIVWFIVITTILSKFGISVEGVIASAGVVGLAVGFGAQTIV
Newman KSNKKRSKTLISLVQNVVKYIVWFIVITTILSKFGISVEGVIASAGVVGLAVGFGAQTIV
USA300_FPR3757 KSNKKRSKTLISLVQNVVKYIVWFIVITTILSKFGISVEGVIASAGVVGLAVGFGAQTIV
************************************************************
COL KDVITGFFIIFESQFDVGDYVKINNGGTTVAEGTVKSIGLRSTRINTISGELTILPNSSM
N315 KDVITGFFIIFESQFDVGDYVKINNGGTTVAEGTVKSIGLRSTRINTISGELTILPNSSM
NCTC8325 KDVITGFFIIFESQFDVGDYVKINNGGTTVAEGTVKSIGLRSTRINTISGELTILPNSSM
Newman KDVITGFFIIFESQFDVGDYVKINNGGTTVAEGTVKSIGLRSTRINTISGELTILPNSSM
USA300_FPR3757 KDVITGFFIIFESQFDVGDYVKINNGGTTVAEGTVKSIGLRSTRINTISGELTILPNSSM
************************************************************
COL GEITNYSITNGTAIVKIPVSVEENIDNVDKKLNKLFTSLRSKYYLFVSDPVVIGIDAIED
N315 GEITNYSITNGTAIVKIPVSVDENIDNVEKKLNKLFTSLRSKYYLFVSDPVVIGIDAFED
NCTC8325 GEITNYSITNGTAIVKIPVSVEENIDNVDKKLNKLFTSLRSKYYLFVSDPVVIGIDAIED
Newman GEITNYSITNGTAIVKIPVSVEENIDNVDKKLNKLFTSLRSKYYLFVSDPVVIGIDAIED
USA300_FPR3757 GEITNYSITNGTAIVKIPVSVEENIDNVDKKLNKLFTSLRSKYYLFVSDPVVIGIDAIED
*********************:******:****************************:**
COL TRVILRISAETIPGEGFAGARIIRKEVQKMFLQEGIKTPQPIMTAYNHSENGV
N315 TRVILRVSAETIPGEGFSGARIIRKEVQKMFLQEGIKTPQPIMTPFNHSENGV
NCTC8325 TRVILRISAETIPGEGFAGARIIRKEVQKMFLQEGIKTPQPIMTAYNHSENGV
Newman TRVILRISAETIPGEGFAGARIIRKEVQKMFLQEGIKTPQPIMTAYNHSENGV
USA300_FPR3757 TRVILRISAETIPGEGFAGARIIRKEVQKMFLQEGIKTPQPIMTAYNHSENGV
******:**********:**************************.:*******