PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN001702000
• symbol^?: —
• synonym:
• description^?: bifunctional autolysin

  descriptions from strain specific annotations:

  • bifunctional autolysin
  • cell wall hydrolase
  • phage N-acetylglucosamidase
  • mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
  • phage N-acetylglucosaminidase
  • putative cell wall hydrolase
• strand^?: +
• coordinates^?: 2043519..2045417
• synteny block^?: BlockID0011240
• occurrence^?: in 18% of 33 strains

⊟Orthologs

COL:
—
N315:
—
NCTC8325:
SAOUHSC_02023
Newman:
NWMN_1035
USA300_FPR3757:
—
04-02981:
—
08BA02176:
—
11819-97:
—
6850:
—
71193:
—
ECT-R 2:
—
ED133:
—
ED98:
—
HO 5096 0412:
—
JH1:
SaurJH1_0372
JH9:
SaurJH9_0363
JKD6008:
SAA6008_01838
JKD6159:
—
LGA251:
—
M013:
—
MRSA252:
—
MSHR1132:
—
MSSA476:
—
Mu3:
—
Mu50:
—
MW2:
—
RF122:
—
ST398:
—
T0131:
—
TCH60:
—
TW20:
SATW20_03840
USA300_TCH1516:
—
VC40:
—

⊟Genome Viewer

NCTC8325
Newman

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  NCTC8325        MGLPNPKNRKPTASEVVEWALYIAKNKIAIDVPGSGMGAQCWDLPNYLLDKYWGFRTWGN
  Newman          MGLPNPKNRKPTASEVVEWALYIAKNKIAIDVPGSGMGAQCWDLPNYLLDKYWGFRTWGN
                  ************************************************************
  
  NCTC8325        ADAMAQKSNYRGRDFKIIRNTKDFVPQPGDWGVWTGGWAGHVNIVVGPCTKDYWYGVDQN
  Newman          ADAMAQKSNYRGRDFKIIRNTKDFVPQPGDWGVWTGGWAGHVNIVVGPCTKDYWYGVDQN
                  ************************************************************
  
  NCTC8325        WYTNNATGSPPYKIKHSYHDGPGGGVKYFVRPPYHPDKTTPAPKPEDDSDDNEKNNKKVP
  Newman          WYTNNATGSPPYKIKHSYHDGPGGGVKYFVRPPYHPDKTTPAPKPEDDSDDNEKNNKKVP
                  ************************************************************
  
  NCTC8325        IWKDVTTIKYTISSQEVNYPEYIYHFIVEGNRRLEKPKGIMIRNAQTMSSVESLYNSRKK
  Newman          IWKDVTTIKYTISSQEVNYPEYIYHFIVEGNRRLEKPKGIMIRNAQTMSSVESLYNSRKK
                  ************************************************************
  
  NCTC8325        YKQDVEYPHFYVDRHNIWAPRRAVFEVPNEPDYIVIDVCEDYSASKNEFIFNEIHAMVVA
  Newman          YKQDVEYPHFYVDRHNIWAPRRAVFEVPNEPDYIVIDVCEDYSASKNEFIFNEIHAMVVA
                  ************************************************************
  
  NCTC8325        VDMMAKYEIPLSIENLKVDDSIWRSMLEHVNWNMIDNGVPPKDKYEALEKALLNIFKNRE
  Newman          VDMMAKYEIPLSIENLKVDDSIWRSMLEHVNWNMIDNGVPPKDKYEALEKALLNIFKNRE
                  ************************************************************
  
  NCTC8325        KLLNSITKPTVTKSRIKVMVDNKNADIANVRDSSPTANNGSASKQPQIITETSPYTFKQA
  Newman          KLLNSITKPTVTKSRIKVMVDNKNADIANVRDSSPTANNGSASKQPQIITETSPYTFKQA
                  ************************************************************
  
  NCTC8325        LDKQMARGNPKKSNAWGWANATRAQTSSAMNVKRIWESNTQCYQMLNLGKYQGVSVSALN
  Newman          LDKQMARGNPKKSNAWGWANATRAQTSSAMNVKRIWESNTQCYQMLNLGKYQGVSVSALN
                  ************************************************************
  
  NCTC8325        KILKGKGTLNNQGKAFAEACKKHNINEIYLIAHAFLESGYGTSNFANGKDGVYNYFGIGA
  Newman          KILKGKGTLNNQGKAFAEACKKHSINEIYLIAHAFLESGYGTSNFANGKDGVYNYFGIGA
                  ***********************.************************************
  
  NCTC8325        YDNNPNYAMTFARNKGWTSPAKAIMGGASFVRKDYINKGQNTLYRIRWNPKNPATHQYAT
  Newman          YDNNPNYAMTFARNKGWTSPAKAIMGGASFVRKDYINKGQNTLYRIRWNPKNPATHQYAT
                  ************************************************************
  
  NCTC8325        AIEWCQHQASTIAKLYKQIGLKGIYFTRDKYK
  Newman          AIEWCQHQASTIAKLYKQIGLKGIYFTRDKYK
                  ********************************