PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN001094000
• symbol^?: fadD
• synonym:
• description^?: glutaryl-CoA dehydrogenase

  descriptions from strain specific annotations:

  • glutaryl-CoA dehydrogenase
  • acyl-CoA dehydrogenase
  • acyl-CoA dehydrogenase, putative
  • acyl-CoA dehydrogenase FadD
  • acyl-CoA dehydrogenase FadD-like protein
  • acyl-CoA dehydrogenase, middle domain-containing protein
  • acyl-CoA dehydrogenase, N-terminal domain protein
  • acyl-CoA dehydrogenase domain-containing protein
  • acyl-CoA dehydrogenase family protein
  • NRAMP family Mn2+/Fe2+ transporter
  • pseudogene
  • putative acyl-CoA dehydrogenase
• strand^?: -
• coordinates^?: 1370676..1371887
• synteny block^?: BlockID0006160
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL0213
N315:
SA0225
NCTC8325:
SAOUHSC_00197
Newman:
NWMN_0169 (fadD)
USA300_FPR3757:
SAUSA300_0227 (fadD)
04-02981:
SA2981_0233
08BA02176:
C248_0217 (fadD)
11819-97:
MS7_0219
6850:
RSAU_000178 (fadD)
71193:
ST398NM01_0243
ECT-R 2:
ECTR2_193
ED133:
SAOV_0170
ED98:
SAAV_0198
HO 5096 0412:
SAEMRSA15_01910 (fadD)
JH1:
SaurJH1_0223
JH9:
SaurJH9_0217
JKD6008:
SAA6008_00202 (fadD)
JKD6159:
SAA6159_00207 (fadD)
LGA251:
SARLGA251_01970 (fadD)
M013:
M013TW_0212
MRSA252:
SAR0225 (fadD)
MSHR1132:
SAMSHR1132_01980
MSSA476:
SAS0209
Mu3:
SAHV_0232
Mu50:
SAV0233
MW2:
MW0209
RF122:
SAB0172c (fadD)
ST398:
SAPIG0243
T0131:
SAT0131_00220
TCH60:
HMPREF0772_10272 (fadD)
TW20:
SATW20_02340 (fadD)
USA300_TCH1516:
USA300HOU_0242
VC40:
SAVC_00905

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             ---------------MTFEKETVLKTLFPEDVLSIAKGLTDGEVEFLQQVDSLLESKYRE
  N315            ---------------MTFEKETVLKTLFPEDVLSIAKGLTDGEVEFLQQVDSLLESNYRE
  NCTC8325        ---------------MTFEKETVLKTLFPEDVLSIAKGLTDGEVEFLQQVDSLLESKYRE
  Newman          MHFTLVFILFLGGIYMTFEKETVLKTLFPEDVLSIAKGLTDGEVEFLQQVDSLLESKYRE
  USA300_FPR3757  ---------------MTFEKETVLKTLFPEDVLSIAKGLTDGEVEFLQQVDSLLESKYRE
                                 *****************************************:***
  
  COL             NINQHWIDATVPEDYFKDLGELNYFNNPLLYKDRPNAKMPSQLFQFFMSYLLARFDISLA
  N315            NINQHWIDATVPEDYFKDLGELNYFNNPLLYKDRPNAKMPSQLFQFFMSYLLARFDISLA
  NCTC8325        NINQHWIDATVPEDYFKDLGELNYFNNPLLYKDRPNAKMPSQLFQFFMSYLLARFDISLA
  Newman          NINQHWIDATVPEDYFKDLGELNYFNNPLLYKDRPNAKMPSQLFQFFMSYLLARFDISLA
  USA300_FPR3757  NINQHWIDATVPEDYFKDLGELNYFNNPLLYKDRPNAKMPSQLFQFFMSYLLARFDISLA
                  ************************************************************
  
  COL             TLLGVHQGLGHNTFYFGGSKEQIAKYVPKLQSHELRTCFALTEPEHGSDVAGGLETVAER
  N315            TLLGVHQGLGHNTFYFGGSKEQIAKYVPKLLSHELRTCFALTEPEHGSDVAGGLETVAER
  NCTC8325        TLLGVHQGLGHNTFYFGGSKEQIAKYVPKLQSHELRTCFALTEPEHGSDVAGGLETVAER
  Newman          TLLGVHQGLGHNTFYFGGSKEQIAKYVPKLQSHELRTCFALTEPEHGSDVAGGLETVAER
  USA300_FPR3757  TLLGVHQGLGHNTFYFGGSKEQIAKYVPKLQSHELRTCFALTEPEHGSDVAGGLETVAER
                  ****************************** *****************************
  
  COL             QGDTWVINGEKKWIGGAHVSDVIPVFAVNKETGKPHCFVVRPEQDGVDIEVIDNKIALRI
  N315            QGDTWVINGEKKWIGGAHVSDVIPVFAVNKKTGKPHCFVVRPEQDGVDIEVIDNKIALRI
  NCTC8325        QGDTWVINGEKKWIGGAHVSDVIPVFAVNKETGKPHCFVVRPEQDGVDIEVIDNKIALRI
  Newman          QGDTWVINGEKKWIGGAHVSDVIPVFAVNKETGKPHCFVVRPEQDGVDIEVIDNKIALRI
  USA300_FPR3757  QGDTWVINGEKKWIGGAHVSDVIPVFAVNKETGKPHCFVVRPEQDGVDIEVIDNKIALRI
                  ******************************:*****************************
  
  COL             VPNALIKLTNVKVDEADRLQNITSFKDIAKILYSTRAGVAYMATGGMAGALRATLDYVTE
  N315            VPNALIKLTNVKVDEADRLQNITSFKDIAKILYSTRAGVAYMATGGMAGALRATLDYVTE
  NCTC8325        VPNALIKLTNVKVDEADRLQNITSFKDIAKILYSTRAGVAYMATGGMAGALRATLDYVTE
  Newman          VPNALIKLTNVKVDEADRLQNITSFKDIAKILYSTRAGVAYMATGGMAGALRATLDYVTE
  USA300_FPR3757  VPNALIKLTNVKVDEADRLQNITSFKDIAKILYSTRAGVAYMATGGMAGALRATLDYVTE
                  ************************************************************
  
  COL             RKQFGKPISKYQLIQEKLAMMQGNLAQAMATCAQLANMQAHGEYDEVATSTAKMMNALRL
  N315            RKQFGKPISKYQLIQEKLAMMQGNLAQAMATCAQLANMQAHGEYDEVATSTAKMMNALRL
  NCTC8325        RKQFGKPISKYQLIQEKLAMMQGNLAQAMATCAQLANMQAHGEYDEVATSTAKMMNALRL
  Newman          RKQFGKPISKYQLIQEKLAMMQGNLAQAMATCAQLANMQAHGEYDEVATSTAKMMNALRL
  USA300_FPR3757  RKQFGKPISKYQLIQEKLAMMQGNLAQAMATCAQLANMQAHGEYDEVATSTAKMMNALRL
                  ************************************************************
  
  COL             RETVAMGRGITGGNGILADDYDIARFFSDAEAIYTYEGTHEINALVIGRALTGDSAFV
  N315            RETVAMGRGITGGNGILADDYDIARFFSDAEAIYTYEGTHEINALVIGRALTGDSAFV
  NCTC8325        RETVAMGRGITGGNGILADDYDIARFFSDAEAIYTYEGTHEINALVIGRALTGDSAFV
  Newman          RETVAMGRGITGGNGILADDYDIARFFSDAEAIYTYEGTHEINALVIGRALTGDSAFV
  USA300_FPR3757  RETVAMGRGITGGNGILADDYDIARFFSDAEAIYTYEGTHEINALVIGRALTGDSAFV
                  **********************************************************