Jump to navigation
Jump to search
⊟Summary[edit | edit source]
- pan ID?: SAUPAN001013000
- symbol?: —
- synonym:
- description?: acyl-CoA dehydrogenase
- acyl-CoA dehydrogenase
- acyl-CoA/acyl-ACP dehydrogenase
- Acyl-CoA dehydrogenase-like protein
- Acyl-CoA dehydrogenase, short-chain specific
- Acyl-CoA dehydrogenase family protein
- isovaleryl-CoA dehydrogenase
- pseudogene
- putative acyl-CoA dehydrogenase family protein
- short chain acyl-CoA dehydrogenase
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 1278776..1279814
- synteny block?: BlockID0005410
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_0176
08BA02176:
C248_0164
11819-97:
MS7_0168
6850:
RSAU_000128
71193:
ST398NM01_0189
ECT-R 2:
ECTR2_138
ED133:
SAOV_0121
ED98:
SAAV_0142
HO 5096 0412:
SAEMRSA15_01400
JH1:
SaurJH1_0165
JH9:
SaurJH9_0160
JKD6008:
SAA6008_00152
JKD6159:
SAA6159_00158
LGA251:
SARLGA251_01480
M013:
M013TW_0164
MRSA252:
SAR0176
MSHR1132:
SAMSHR1132_01480
MSSA476:
SAS0150
Mu3:
SAHV_0174
Mu50:
SAV0175
MW2:
MW0149
RF122:
SAB0115
ST398:
SAPIG0189
T0131:
SAT0131_00165 (dnaG)
TCH60:
HMPREF0772_10324
TW20:
SATW20_01850
USA300_TCH1516:
USA300HOU_0188
VC40:
SAVC_00640
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MTLETLIKEQLDPHLVEVDEGTYYPRTFIQQLFVDGYFGEAALRKNAEVIEAVSQSCLTT
N315 MTLETLIKEQLDPHLVEVDEGTYYPRTFIQQLFVDGYFGEAALRKNAEVIEAVSQSCLTT
NCTC8325 MTLETLIKEQLDPHLVEVDEGTYYPRTFIQQLFVDGYFGEAALRKNAEVIEAVSQSCLTT
Newman MTLETLIKEQLDPHLVEVDEGTYYPRTFIQQLFVDGYFGEAALRKNAEVIEAVSQSCLTT
USA300_FPR3757 MTLETLIKEQLDPHLVEVDEGTYYPRTFIQQLFVDGYFGEAALRKNAEVIEAVSQSCLTT
************************************************************
COL GFCLWCQLAFSTYLENATQPHLNNDLQQQLLSGEILGATGLSNPMKSFNDLEKLNLEHTY
N315 GFCLWCQLAFSTYLENATQPHLNNDLQQQLLSGEILGATGLSNPMKSFNDLEKLNLEHTY
NCTC8325 GFCLWCQLAFSTYLENATQPHLNNDLQQQLLSGEILGATGLSNPMKSFNDLEKLNLEHTY
Newman GFCLWCQLAFSTYLENATQPHLNNDLQQQLLSGEILGATGLSNPMKSFNDLEKLNLEHTY
USA300_FPR3757 GFCLWCQLAFSTYLENATQPHLNNDLQQQLLSGEILGATGLSNPMKSFNDLEKLNLEHTY
************************************************************
COL VDGQLVVSGRMPAVSNIQEDHYFGAISKHESSDEFVMFILRANQDGITLVEKTNFLGVNG
N315 VDGQLVVSGRMPAVSNIQEDHYFGAISKHESSDEFVMFILRANQDGITLVEKTNFLGVNG
NCTC8325 VDGQLVVSGRMPAVSNIQEDHYFGAISKHESSDEFVMFILRANQDGITLVEKTNFLGVNG
Newman VDGQLVVSGRMPAVSNIQEDHYFGAISKHESSDEFVMFILRANQDGITLVEKTNFLGVNG
USA300_FPR3757 VDGQLVVSGRMPAVSNIQEDHYFGAISKHESSDEFVMFILRANQDGITLVEKTNFLGVNG
************************************************************
COL SATYQITLNQVVVPQSQIITHDAKQFAATIRPQFIAYQIPIGLGSIKSSLELIDAFSNVQ
N315 SATYQITLNQVVVPQSQIITHDAKQFAATIRPQFIAYQIPIGLGSIKSSLELIDAFSNAQ
NCTC8325 SATYQITLNQVVVPQSQIITHDAKQFAATIRPQFIAYQIPIGLGSIKSSLELIDAFSNVQ
Newman SATYQITLNQVVVPQSQIITHDAKQFAATIRPQFIAYQIPIGLGSIKSSLELIDAFSNVQ
USA300_FPR3757 SATYQITLNQVVVPQSQIITHDAKQFAATIRPQFIAYQIPIGLGSIKSSLELIDAFSNVQ
**********************************************************.*
COL NGINQYLEYDVEAFKKRYRQLREEYYAILDDGNLTSHLNELISLKKDIGYLLLDVNQASV
N315 NGINQYLEYDVEAFKKRYRQLREEYYAILDDGNLTSHLSELISLKKDIGYLLLDVNQASV
NCTC8325 NGINQYLEYDVEAFKKRYRQLREEYYAILDDGNLTSHLNELISLKKDIGYLLLDVNQASV
Newman NGINQYLEYDVEAFKKRYRQLREEYYAILDDGNLTSHLNELISLKKDIGYLLLDVNQASV
USA300_FPR3757 NGINQYLEYDVEAFKKRYRQLREEYYAILDDGNLTSHLNELISLKKDIGYLLLDVNQASV
**************************************.*********************
COL VNGGSRAYTPYSPQVRKLKEGFFFAALTPTLRHLGKLEAELKG
N315 VNGGSRAYTPYSPQVRKLKEGFFFAALTPTLRHLGKLEAELKG
NCTC8325 VNGGSRAYTPYSPQVRKLKEGFFFAALTPTLRHLGKLEAELKG
Newman VNGGSRAYTPYSPQVRKLKEGFFFAALTPTLRHLGKLEAELKG
USA300_FPR3757 VNGGSRAYTPYSPQVRKLKEGFFFAALTPTLRHLGKLEAELKG
*******************************************