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⊟Summary[edit | edit source]
- pan ID?: SAUPAN000987000
- symbol?: capJ
- synonym:
- description?: capsular polysaccharide biosynthesis protein
- capsular polysaccharide biosynthesis protein
- capsular polysaccharide biosynthesis protein Cap5J
- capsular polysaccharide biosynthesis protein CapJ
- capsular polysaccharide synthesis protein Cap5J
- capsular polysaccharide synthesis enzyme Cap5J
- O-antigen polymerase
- O-Antigen Polymerase family protein
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 1245665..1252745
- synteny block?: BlockID0005200
- occurrence?: in 55% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_0159 (capJ)
08BA02176:
C248_0147 (capJ)
11819-97:
—
6850:
—
71193:
ST398NM01_0172
ECT-R 2:
ECTR2_115
ED133:
—
ED98:
SAAV_0126 (cap5J)
HO 5096 0412:
SAEMRSA15_01240 (cap5J)
JH1:
SaurJH1_0149
JH9:
SaurJH9_0144
JKD6008:
—
JKD6159:
—
LGA251:
—
M013:
—
MRSA252:
—
MSHR1132:
—
MSSA476:
—
Mu3:
SAHV_0157 (capJ)
Mu50:
SAV0158 (capJ)
MW2:
—
RF122:
—
ST398:
SAPIG0172
T0131:
—
TCH60:
—
TW20:
—
USA300_TCH1516:
USA300HOU_0172 (cap5J)
VC40:
SAVC_00560
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MKFFVLCAIISMNIFIVISTFTKEVLGFPIEPVYYSTMVGIALITTVFAIYKIIVTQEIP
N315 MKFFVLCAIISMNIFIVISTFTKEVLGFPIEPVYYSTMVGIALITTVFAIYKIIVTQEIP
NCTC8325 MKFFVLCAIISMNIFIVISTFTKEVLGFPIEPVYYSTMVGIALITTVFAIYKIIVTQEIP
Newman MKFFVLCAIISMNIFIVISTFTKEVLGFPIEPVYYSTMVGIALITTVFAIYKIIVTQEIP
USA300_FPR3757 MKFFVLCAIISMNIFIVISTFTKEVLGFPIEPVYYSTMVGIALITTVFAIYKIIVTQEIP
************************************************************
COL RGLILLIAICLLYLAFYYFSPDKEEKLAKNNILFFLTWAVPAAISGIYIKYINKATVERF
N315 RGLILLIAICLLYLAFYYFSPDKEEKLAKNNILFFLTWAVPAAISGIYIKYINKATVERF
NCTC8325 RGLILLIAICLLYLAFYYFSPDKEEKLAKNNILFFLTWAVPAAISGIYIKYINKATVERF
Newman RGLILLIAICLLYLAFYYFSPDKEEKLAKNNILFFLTWAVPAAISGIYIKYINKATVERF
USA300_FPR3757 RGLILLIAICLLYLAFYYFSPDKEEKLAKNNILFFLTWAVPAAISGIYIKYINKATVERF
************************************************************
COL FKLVFFIFSVSFIFVILIPKLTGEIPSYINFGLMNYQNASYLSAFTAGLGIYFIMKGSVK
N315 FKLVFFIFSISFIFVILIPKLTGEIPSYINFGLMNYQNASYLSAFTAGLGIYFIMKGSVK
NCTC8325 FKLVFFIFSVSFIFVILIPKLTGEIPSYINFGLMNYQNASYLSAFTAGLGIYFIMKGSVK
Newman FKLVFFIFSVSFIFVILIPKLTGEIPSYINFGLMNYQNASYLSAFTAGLGIYFIMKGSVK
USA300_FPR3757 FKLVFFIFSVSFIFVILIPKLTGEIPSYINFGLMNYQNASYLSAFTAGLGIYFIMKGSVK
*********:**************************************************
COL HKWIYVLFTIIDIPIVFIPGGRGGAILLILYGLFAFILITFKRGIPIAVKSIMYIFALSI
N315 HKWIYVLFTIIDIPIVFIPGGRGGAILLILYGLFAFILITFKRGIPIAVKSIMYIFALSI
NCTC8325 HKWIYVLFTIIDIPIVFIPGGRGGAILLILYGLFAFILITFKRGIPIAVKSIMYIFALSI
Newman HKWIYVLFTIIDIPIVFIPGGRGGAILLILYGLFAFILITFKRGIPIAVKSIMYIFALSI
USA300_FPR3757 HKWIYVLFTIIDIPIVFIPGGRGGAILLILYGLFAFILITFKRGIPIAVKSIMYIFALSI
************************************************************
COL SSVLIYFLFTKGSNTRTFSYLQGGTLNLEGTSGRGPIYEKGIYFIQQSSLLGYGPFNYYK
N315 SSVLIYFLFTKGSNTRTFSYLQGGTLNLEGTSGRGPIYEKGIYFIQQSPLLGYGPFNYYK
NCTC8325 SSVLIYFLFTKGSNTRTFSYLQGGTLNLEGTSGRGPIYEKGIYFIQQSSLLGYGPFNYYK
Newman SSVLIYFLFTKGSNTRTFSYLQGGTLNLEGTSGRGPIYEKGIYFIQQSSLLGYGPFNYYK
USA300_FPR3757 SSVLIYFLFTKGSNTRTFSYLQGGTLNLEGTSGRGPIYEKGIYFIQQSSLLGYGPFNYYK
************************************************.***********
COL LIGNIPHNIIIELILSFGLLGFFIIMICILLLVYKMIRNYDPNTIDLLVMFIAIYPITLL
N315 LIGNIPHNIIIELILSFGLLGFFIIMICILLLVYKMIRNYDPNTIDLLVMFIAIYPITLL
NCTC8325 LIGNIPHNIIIELILSFGLLGFFIIMICILLLVYKMIRNYDPNTIDLLVMFIAIYPITLL
Newman LIGNIPHNIIIELILSFGLLGFFIIMICILLLVYKMIRNYDPNTIDLLVMFIAIYPITLL
USA300_FPR3757 LIGNIPHNIIIELILSFGLLGFFIIMICILLLVYKMIRNYDPNTIDLLVMFIAIYPITLL
************************************************************
COL MFSSNYLVVSEFWFVLFYFITKGRRHHG
N315 MFSSNYLVVSEFWFVLFYFITKGRRHHG
NCTC8325 MFSSNYLVVSEFWFVLFYFITKGRRHHG
Newman MFSSNYLVVSEFWFVLFYFITKGRRHHG
USA300_FPR3757 MFSSNYLVVSEFWFVLFYFITKGRRHHG
****************************