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⊟Summary[edit | edit source]
- pan ID?: SAUPAN000986000
- symbol?: capI
- synonym:
- description?: capsular polysaccharide biosynthesis protein
- capsular polysaccharide biosynthesis protein
- capsular polysaccharide biosynthesis protein Cap5I
- capsular polysaccharide biosynthesis protein CapI
- capsular polysaccharide synthesis protein Cap5I
- capsular polysaccharide synthesis enzyme Cap5I
- capsular polysaccharide biosynthesis protein CapI5
- glycosyltransferase
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 1244542..1245651
- synteny block?: BlockID0005200
- occurrence?: in 55% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_0158 (capI)
08BA02176:
C248_0146 (capI)
11819-97:
—
6850:
—
71193:
ST398NM01_0171
ECT-R 2:
ECTR2_114
ED133:
—
ED98:
SAAV_0125 (cap5I)
HO 5096 0412:
SAEMRSA15_01230 (capI5)
JH1:
SaurJH1_0148
JH9:
SaurJH9_0143
JKD6008:
—
JKD6159:
—
LGA251:
—
M013:
—
MRSA252:
—
MSHR1132:
—
MSSA476:
—
Mu3:
SAHV_0156 (capI)
Mu50:
SAV0157 (capI)
MW2:
—
RF122:
—
ST398:
SAPIG0171
T0131:
—
TCH60:
—
TW20:
—
USA300_TCH1516:
USA300HOU_0171 (cap5I)
VC40:
SAVC_00555
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MRILNIVSSNIVQDPRVLKQIETIKGVTDDYKIVGMNNSQATNKRLENLDCNYRLLGSKV
N315 MRILNIVSSNIVQDPRVLKQIETIKGVTNDYKIVGMNNSQATNRRLENLDCNYRLLGSKV
NCTC8325 MRILNIVSSNIVQDPRVLKQIETIKGVTDDYKIVGMNNSQATNKRLENLDCNYRLLGSKV
Newman MRILNIVSSNIVQDPRVLKQIETIKGVTDDYKIVGMNNSQATNKRLENLDCNYRLLGSKV
USA300_FPR3757 MRILNIVSSNIVQDPRVLKQIETIKGVTDDYKIVGMNNSQATNKRLENLDCNYRLLGSKV
****************************:**************:****************
COL DPKNILSKLIKRIRFATGVIREIKAYKPDVIHANDFDVLLMVYLSNYKKANIVYDAHEIY
N315 DPKNILSKLIKRIRFATGVIREIKAFKPDVIHANDFDVLLMVYLSNYKKANIVYDAHEIY
NCTC8325 DPKNILSKLIKRIRFATGVIREIKAYKPDVIHANDFDVLLMVYLSNYKKANIVYDAHEIY
Newman DPKNILSKLIKRIRFATGVIREIKAYKPDVIHANDFDVLLMVYLSNYKKANIVYDAHEIY
USA300_FPR3757 DPKNILSKLIKRIRFATGVIREIKAYKPDVIHANDFDVLLMVYLSNYKKANIVYDAHEIY
*************************:**********************************
COL AKNAFINKVPLISKFVESIEKHIVKHRVNAFVTVSHAAKEYYQSKGYKKEANVITNAPIL
N315 AKNAFINKVPLISKFVESIEKHIVKHRVNAFVTVSHAAKEYYQSKGYKKEANVITNAPIL
NCTC8325 AKNAFINKVPLISKFVESIEKHIVKHRVNAFVTVSHAAKEYYQSKGYKKEANVITNAPIL
Newman AKNAFINKVPLISKFVESIEKHIVKHRVNAFVTVSHAAKEYYQSKGYKKEANVITNAPIL
USA300_FPR3757 AKNAFINKVPLISKFVESIEKHIVKHRVNAFVTVSHAAKEYYQSKGYKKEANVITNAPIL
************************************************************
COL NDSREFKEIENFKEIVYQGQIVMDRGYEEFIIASSAFKQNAPSFIIRGFGPHEEVIKELI
N315 NDSREFKEIENFKEIVYQGQIVMDRGYEEFIIASSAFKQNAPSFIIRGFGPHEEVIKELI
NCTC8325 NDSREFKEIENFKEIVYQGQIVMDRGYEEFIIASSAFKQNAPSFIIRGFGPHEEVIKELI
Newman NDSREFKEIENFKEIVYQGQIVMDRGYEEFIIASSAFKQNAPSFIIRGFGPHEEVIKELI
USA300_FPR3757 NDSREFKEIENFKEIVYQGQIVMDRGYEEFIIASSAFKQNAPSFIIRGFGPHEELIKELI
******************************************************:*****
COL SYNPENIRLDKPVEVKELVDKLAESNVGVVLTKPVSINFEYTVSNKIFECIHAGLPVILS
N315 SYNSENIRLDKPVEVKELVDKLAESNVGVILTKPVSINFEYTVSNKIFECIHAGLPVILS
NCTC8325 SYNPENIRLDKPVEVKELVDKLAESNVGVVLTKPVSINFEYTVSNKIFECIHAGLPVILS
Newman SYNPENIRLDKPVEVKELVDKLAESNVGVVLTKPVSINFEYTVSNKIFECIHAGLPVILS
USA300_FPR3757 SYNPENIRLDKPVEVKELVDKLAESNVGVVLTKPVSINFEYTVSNKIFECIHAGLPVILS
***.*************************:******************************
COL PVKEHIYLNEKYKFGIVLKEVTPLEIEKAVRKLRDNHDLFNHLRQNAIKASKILNWQIES
N315 PVKEHIYLNEKYKFGIVLKEVTPLEIEKAVRKLRDNHDLFNHLRQNAIKASKILNWQIES
NCTC8325 PVKEHIYLNEKYKFGIVLKEVTPLEIEKAVRKLRDNHDLFNHLRQNAIKASKILNWQIES
Newman PVKEHIYLNEKYKFGIVLKEVTPLEIEKAVRKLRDNHDLFNHLRQNAIKASKILNWQIES
USA300_FPR3757 PVKEHIYLNEKYKFGIVLKEVTPLEIEKAVRKLRDNHDLFNHLRQNAIKASKILNWQIES
************************************************************
COL ERLVELYKF
N315 ERLVELYKF
NCTC8325 ERLVELYKF
Newman ERLVELYKF
USA300_FPR3757 ERLVELYKF
*********