PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN000922000
• symbol^?: sbnH
• synonym:
• description^?: diaminopimelate decarboxylase

  descriptions from strain specific annotations:

  • diaminopimelate decarboxylase
  • pyridoxal-dependent decarboxylase
  • putative diaminopimelate decarboxylase protein
  • staphyloferrin B biosynthesis decarboxylase SbnH
  • alanine racemase
  • diaminopimelate decarboxylase protein
  • Orn/DAP/Arg decarboxylase 2
  • pyridoxal-dependent decarboxylase, C-terminal sheet domain protein
  • pyridoxal-dependent decarboxylase decarboxylase
  • Siderophore staphylobactin biosynthesis protein SbnH
• strand^?: +
• coordinates^?: 1192127..1193329
• synteny block^?: BlockID0004590
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL0107
N315:
SA0119
NCTC8325:
SAOUHSC_00082
Newman:
NWMN_0067 (sbnH)
USA300_FPR3757:
SAUSA300_0125
04-02981:
SA2981_0124 (sbnH)
08BA02176:
C248_0111
11819-97:
MS7_0115
6850:
RSAU_000077
71193:
ST398NM01_0135
ECT-R 2:
ECTR2_79
ED133:
SAOV_0070
ED98:
SAAV_0091
HO 5096 0412:
SAEMRSA15_00890
JH1:
SaurJH1_0114
JH9:
SaurJH9_0110
JKD6008:
SAA6008_00101 (sbnH)
JKD6159:
SAA6159_00106 (sbnH)
LGA251:
SARLGA251_00980 (sbnH)
M013:
M013TW_0113
MRSA252:
SAR0126
MSHR1132:
SAMSHR1132_00990
MSSA476:
SAS0097
Mu3:
SAHV_0122
Mu50:
SAV0123
MW2:
MW0096
RF122:
SAB0062
ST398:
SAPIG0135
T0131:
SAT0131_00109
TCH60:
HMPREF0772_10374 (sbnH)
TW20:
SATW20_01350 (sbnH)
USA300_TCH1516:
USA300HOU_0134 (lysA1)
VC40:
SAVC_00355

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MRIVQPVIEQLKAQSHPVCHYIYDLVGLEHHLQHITSSLPSNCQMYYAMKANSERKILDT
  N315            MRIVQPVIEQLKAQSHPVCHYIYDLVGLEHHLQHITSSLPSNCQMYYAMKANSERTILDT
  NCTC8325        MRIVQPVIEQLKAQSHPVCHYIYDLVGLEHHLQHITSSLPSNCQMYYAMKANSERKILDT
  Newman          MRIVQPVIEQLKAQSHPVCHYIYDLVGLEHHLQHITSSLPSNCQMYYAMKANSERKILDT
  USA300_FPR3757  MRIVQPVIEQLKAQSHPVCHYIYDLVGLEHHLQHITSSLPSNCQMYYAMKANSERKILDT
                  *******************************************************.****
  
  COL             ISQYVEGFEVASQGEIAKGLAFKPANHIIFGGPGKTDEELRYAVSEGVQRIHVESMHELQ
  N315            ISQYVEGFEVASQGEIAKGLAFKPANHIIFGGPGKTDEELRYAVSEGVQRIHVESMHELQ
  NCTC8325        ISQYVEGFEVASQGEIAKGLAFKPANHIIFGGPGKTDEELRYAVSEGVQRIHVESMHELQ
  Newman          ISQYVEGFEVASQGEIAKGLAFKPANHIIFGGPGKTDEELRYAVSEGVQRIHVESMHELQ
  USA300_FPR3757  ISQYVEGFEVASQGEIAKGLAFKPANHIIFGGPGKTDEELRYAVSEGVQRIHVESMHELQ
                  ************************************************************
  
  COL             RLNAILEDEDKTQHILLRVNLAGPFPNATLHMAGRPTQFGISEDEVDDVIEAALAMPKIH
  N315            RLNAILEDEDKTQHILLRVNLAGPFPNATLHMAGRPTQFGISEDEVDDVIEAALVMPNIH
  NCTC8325        RLNAILEDEDKTQHILLRVNLAGPFPNATLHMAGRPTQFGISEDEVDDVIEAALAMPKIH
  Newman          RLNAILEDEDKTQHILLRVNLAGPFPNATLHMAGRPTQFGISEDEVDDVIEAALAMPKIH
  USA300_FPR3757  RLNAILEDEDKTQHILLRVNLAGPFPNATLHMAGRPTQFGISEDEVDDVIEAALAMPKIH
                  ******************************************************.**:**
  
  COL             LDGFHFHSISNNLDSNLHVDVVKLYFKKAKAWSEKHRFPLKHINLGGGIGVNYADLTNQF
  N315            LDGFHFHSISNNLDSNLHVDVVKLYFKKAKSWSEKHRFPLKHINLGGGIGVNYADLTSQF
  NCTC8325        LDGFHFHSISNNLDSNLHVDVVKLYFKKAKAWSEKHRFPLKHINLGGGIGVNYADLTNQF
  Newman          LDGFHFHSISNNLDSNLHVDVVKLYFKKAKAWSEKHRFPLKHINLGGGIGVNYADLTNQF
  USA300_FPR3757  LDGFHFHSISNNLDSNLHVDVVKLYFKKAKAWSEKHRFPLKHINLGGGIGVNYADLTNQF
                  ******************************:**************************.**
  
  COL             EWDNFVERFKTLIVEQEMEDVTLNFECGRFIVAHIGYYVTEVLDIKKVHGAWYAILRGGT
  N315            EWDNFVENFKTLIVEQEMEDVTLNFECGRFIVAHIGYYVTEVLDIKKVHGAWYAILRGGT
  NCTC8325        EWDNFVERFKTLIVEQEMEDVTLNFECGRFIVAHIGYYVTEVLDIKKVHGAWYAILRGGT
  Newman          EWDNFVERFKTLIVEQEMEDVTLNFECGRFIVAHIGYYVTEVLDIKKVHGAWYAILRGGT
  USA300_FPR3757  EWDNFVERFKTLIVEQEMEDVTLNFECGRFIVAHIGYYVTEVLDIKKVHGAWYAILRGGT
                  *******.****************************************************
  
  COL             QQFRLPVSWQHNHPFDIYRYKDNPYSFEKVSISRQDTTLVGQLCTPKDVFAREVQIDAIS
  N315            QQFRLPVSWQHNHPFEIYRYKDNPYSFEKVSISRQDTTLVGQLCTPKDVFAREVQIDAIS
  NCTC8325        QQFRLPVSWQHNHPFDIYRYKDNPYSFEKVSISRQDTTLVGQLCTPKDVFAREVQIDAIS
  Newman          QQFRLPVSWQHNHPFDIYRYKDNPYSFEKVSISRQDTTLVGQLCTPKDVFAREVQIDAIS
  USA300_FPR3757  QQFRLPVSWQHNHPFDIYRYKDNPYSFEKVSISRQDTTLVGQLCTPKDVFAREVQIDAIS
                  ***************:********************************************
  
  COL             TGDVIVFKYAGAYGWSISHHDFLSHPHPEFIYLTQTKEDE
  N315            TGDVIVFKYAGAYGWSISHHDFLSHPHPEFIYLTQTKEDE
  NCTC8325        TGDVIVFKYAGAYGWSISHHDFLSHPHPEFIYLTQTKEDE
  Newman          TGDVIVFKYAGAYGWSISHHDFLSHPHPEFIYLTQTKEDE
  USA300_FPR3757  TGDVIVFKYAGAYGWSISHHDFLSHPHPEFIYLTQTKEDE
                  ****************************************