From AureoWiki
Jump to navigation Jump to search

NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS13605 [old locus tag: SACOL2599 ]
  • pan locus tag?: SAUPAN006261000
  • symbol: SACOL_RS13605
  • pan gene symbol?: —
  • synonym:
  • product: ferrous iron transporter B

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL_RS13605 [old locus tag: SACOL2599 ]
  • symbol: SACOL_RS13605
  • product: ferrous iron transporter B
  • replicon: chromosome
  • strand: -
  • coordinates: 2659404..2660744
  • length: 1341
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002951 (2659404..2660744) NCBI
  • BioCyc: SACOL_RS13605 BioCyc
  • MicrobesOnline: see SACOL2599

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    ATGTTAGAAGTGAAATATGATATGAGAACTGGGCATTATACGCCCATACCTAATGAACCT
    CATTATTTGGTTATTAGTCATGCGGATAAACTTACCGCAACAGAAAAAGCGAAATTAAGA
    TTATTAATCATAAAACAGAAATTAGATATTTCATTGGCAGAAAGTGTAGTTTCTTCGCCT
    ATAGCGAGTGAACATGTGATAGAACAATTGACACTATTTCAACATGAGCGACGACATTTA
    AGACCTAAAATAAGTGCGACATTTTTAGCCTGGTTGTTGATATTTTTAATGTTTGCATTG
    CCAATCGGTATCGCTTATCAATTTTCAGATTGGTTTCAAAATCAGTATGTGTCAGCATGG
    ATAGAATATTTAACTCAAACAACATTGCTCAATCACGATATATTACAGCATATATTATTT
    GGTGATTATGGTGTGCTATCACTTGGAACATATTCGCTCGTATGGGCATTGCCGGTTGTA
    ATATTGATTAGTTTATCAACTGCTATAATTGATCAAACAGGACTCAAATCATGGATGATA
    TGGGCAATTGAACCGTCAATGTTATGGATAGGATTACAAGGTAATGATATCGTGCCACTA
    TTAGAAGGGTTTGGATGTAATGCAGCAGCTATTTCACAAGCAGCACACCAATGCCATACC
    TGCACGAAGACACAGTGTATGAGTTTAATAAGCTTTGGTAGTTCTTGTAGTTATCAAATA
    GGTGCGACATTATCTATTTTTAGTGTAGCTGGAAAGTCATGGCTATTTATGCCGTACTTA
    ATATTAGTACTTTTAGGTGGCATCTTACATAATAGGATATGGTTGAAAAAGAATGATCAA
    CAACTTAGCGTTCCGCTACCTTATGATAGGCAATTACATATGCCAAATATACGTCAAATG
    TTGCTACAAATGTGGCAAAATATACAAATGTTTATCGTTCAAGCGCTACCTATTTTTATC
    ACAATCTGTCTTATTGTTAGTATTTTATCACTAACGCCAATTTTGAATGTTTTATCACAA
    ATATTTACACCTATATTATCGTTATTAGGCATCTCGTCAGAATTGTCACCAGGGATTTTA
    TTTTCAATGATTCGAAAAGACGGCATGCTCTTGTTTAATTTGCATCAGGGCGCCTTATTA
    CAAGGAATGACAGCAACACAGTTACTACTACTTGTGTTTTTTAGTTCAACATTTACAGCG
    TGCTCGGTCACAATGACGATGCTTTTGAAACATTTAGGTGGTCAGTCAGCACTAAAATTA
    ATTGGAAAGCAAATGGTGACATCATTGTCTTTAGTTATTGGTGTAGGCATCATTGTTAAA
    ATAGTAATGCTGATTATTTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1341

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL_RS13605 [old locus tag: SACOL2599 ]
  • symbol: SACOL_RS13605
  • description: ferrous iron transporter B
  • length: 446
  • theoretical pI: 8.47213
  • theoretical MW: 49878.2
  • GRAVY: 0.632063

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Transport and binding proteins Cations and iron carrying compounds ferrous iron transport protein B (TIGR00437; HMM-score: 79.7)
  • TheSEED: see SACOL2599
  • PFAM:
    no clan defined Gate; Nucleoside recognition (PF07670; HMM-score: 46.3)
    and 3 more
    Phage_holin_3_7; Putative 3TM holin, Phage_holin_3 (PF05449; HMM-score: 16.1)
    Bunya_G2; Bunyavirus glycoprotein G2 (PF03563; HMM-score: 13.7)
    FeoB_C; Ferrous iron transport protein B C terminus (PF07664; HMM-score: 12.4)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 8
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.002065
    • TAT(Tat/SPI): 0.000176
    • LIPO(Sec/SPII): 0.000591
  • predicted transmembrane helices (TMHMM): 8

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MLEVKYDMRTGHYTPIPNEPHYLVISHADKLTATEKAKLRLLIIKQKLDISLAESVVSSPIASEHVIEQLTLFQHERRHLRPKISATFLAWLLIFLMFALPIGIAYQFSDWFQNQYVSAWIEYLTQTTLLNHDILQHILFGDYGVLSLGTYSLVWALPVVILISLSTAIIDQTGLKSWMIWAIEPSMLWIGLQGNDIVPLLEGFGCNAAAISQAAHQCHTCTKTQCMSLISFGSSCSYQIGATLSIFSVAGKSWLFMPYLILVLLGGILHNRIWLKKNDQQLSVPLPYDRQLHMPNIRQMLLQMWQNIQMFIVQALPIFITICLIVSILSLTPILNVLSQIFTPILSLLGISSELSPGILFSMIRKDGMLLFNLHQGALLQGMTATQLLLLVFFSSTFTACSVTMTMLLKHLGGQSALKLIGKQMVTSLSLVIGVGIIVKIVMLII

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://fungenwikiserver.biologie.uni-greifswald.de/aureowiki/index.php?title=SACOL_RS13605&oldid=96640"