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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

organism: Staphylococcus aureus COL

locus tag: SACOL_RS12100 [old locus tag: SACOL2300 ]

pan locus tag^?: SAUPAN005785000

symbol: SACOL_RS12100

pan gene symbol^?: —

synonym:
product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

type: CDS
locus tag: SACOL_RS12100 [old locus tag: SACOL2300 ]
symbol: SACOL_RS12100
product: hypothetical protein
replicon: chromosome
strand: -
coordinates: 2360653..2361126
length: 474
essential: unknown other strains

⊟Accession numbers[edit | edit source]

Location: NC_002951 (2360653..2361126) NCBI
BioCyc: SACOL_RS12100 BioCyc
MicrobesOnline: see SACOL2300

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

1
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121
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241
301
361
421
ATGGCTGAGAGAATATCTTCTAAAATTAGACGCTTAGAAAAATCAGAAGAACAAATTAAG
TTAGAAAGTTTAAATGAAGTTACAGAGGCAATTGCAGCGAATAAAGATAGTATATTAAAA
GCAATCAAGCTTATTAAAACATTAGATGATGCAAAACTATTAGATGCTTTAAATGGTGCA
ATTCGAGGACGTCAAGTCATCATAAATAAATTTGCAGTTGAACTTAATAAAGATATTTAT
ACAGGGCTATTATCTAATATGGCTTCAATGGTATTTTTATTAGGTGAACTCAATGTATCA
GATTTAAGCGACTTCCTAAATAAAGTTAATAAAGGATTACACGTTGCCAATCAAGCGAGT
CCAAATGCTAAGACAACTATAAGAAGTCTATTGGGCGTATTGAAAGATGACGACATGAAC
CGTAGTTTAACATACATGCTTAATATGCTAAAAGGTATGTCTCGAGAAGAATAA
60
120
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474

⊟Protein[edit | edit source]

⊟General[edit | edit source]

locus tag: SACOL_RS12100 [old locus tag: SACOL2300 ]
symbol: SACOL_RS12100
description: hypothetical protein
length: 157
theoretical pI: 9.49505
theoretical MW: 17478.2
GRAVY: -0.158599

⊟Function[edit | edit source]

TIGRFAM:
TheSEED: see SACOL2300
⊞PFAM:
no clan defined DUF1641; Protein of unknown function (DUF1641) (PF07849; HMM-score: 43.9)
and 2 more
RNase_H (CL0219) MGMT_N; Methylated DNA-protein cysteine methyltransferase, N-terminal (PF09153; HMM-score: 13.6)
DUF362 (CL0471) Lar_N; Lactate racemase N-terminal domain (PF09861; HMM-score: 12.1)

⊟Structure, modifications & cofactors[edit | edit source]

domains:
modifications:
cofactors:
effectors:

⊟Localization[edit | edit source]

⊞
PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helices: 0
⊞
DeepLocPro: Cytoplasmic Membrane
- Cytoplasmic Score: 0.2458
- Cytoplasmic Membrane Score: 0.6857
- Cell wall & surface Score: 0.0027
- Extracellular Score: 0.0658
LocateP:
⊞
SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.0019
- TAT(Tat/SPI): 0.000231
- LIPO(Sec/SPII): 0.00018
predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

GI: 446763555 NCBI
RefSeq: WP_000840811 NCBI
UniProt: see SACOL2300

⊟Protein sequence[edit | edit source]

MAERISSKIRRLEKSEEQIKLESLNEVTEAIAANKDSILKAIKLIKTLDDAKLLDALNGAIRGRQVIINKFAVELNKDIYTGLLSNMASMVFLLGELNVSDLSDFLNKVNKGLHVANQASPNAKTTIRSLLGVLKDDDMNRSLTYMLNMLKGMSREE

⊟Experimental data[edit | edit source]

experimentally validated: see SACOL2300
protein localization: see SACOL2300
quantitative data / protein copy number per cell: see SACOL2300
interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

regulator: SigB* see SACOL2300

⊟Transcription pattern[edit | edit source]

S.aureus Expression Data Browser: data available for NCTC8325

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

Aureolib: no data available

⊟Protein stability[edit | edit source]

half-life: no data available

⊞Biological Material[edit | edit source]

⊞Other Information[edit | edit source]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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