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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

organism: Staphylococcus aureus COL

locus tag: SACOL_RS09740 [old locus tag: SACOL1891 ]

pan locus tag^?: SAUPAN004760000

symbol: SACOL_RS09740

pan gene symbol^?: traP

synonym:
product: signal transduction protein TRAP

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

type: CDS
locus tag: SACOL_RS09740 [old locus tag: SACOL1891 ]
symbol: SACOL_RS09740
product: signal transduction protein TRAP
replicon: chromosome
strand: +
coordinates: 1945770..1946273
length: 504
essential: unknown other strains

⊟Accession numbers[edit | edit source]

Location: NC_002951 (1945770..1946273) NCBI
BioCyc: SACOL_RS09740 BioCyc
MicrobesOnline: see SACOL1891

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

1
61
121
181
241
301
361
421
481
ATGAAGAAACTATATACATCTTATGGCACTTATGGATTTTTACATCAGATAAAAATCAAT
AACCCGACCCATCAACTATTCCAATTTTCAGCATCAGATACTTCAGTTATTTTTGAAGAA
ACTGATGGTGAGACTGTTTTAAAATCACCTTCAATATATGAAGTTATTAAAGAAATTGGT
GAATTCAGTGAACATCATTTCTATTGTGCAATCTTCATTCCATCAACAGAAGATCATGCA
TATCAACTTGAAAAGAAACTGATTAGTGTAGACGATAATTTCAGAAACTTTGGTGGCTTT
AAAAGCTATCGTTTGTTAAGACCTGCTAAAGGTACAACATACAAAATTTATTTCGGATTT
GCTGATCGACATGCATACGAAGACTTTAAGCAATCTGATGCCTTTAATGACCATTTTTCA
AAAGACGCATTAAGTCATTACTTTGGTTCAAGCGGACAACATTCAAGTTATTTTGAAAGA
TATCTATACCCAATAAAAGAATAG
60
120
180
240
300
360
420
480
504

⊟Protein[edit | edit source]

4AE5
PDB

Protein Data Bank: 4AE5

⊟General[edit | edit source]

locus tag: SACOL_RS09740 [old locus tag: SACOL1891 ]
symbol: SACOL_RS09740
description: signal transduction protein TRAP
length: 167
theoretical pI: 6.60285
theoretical MW: 19547.6
GRAVY: -0.58024

⊟Function[edit | edit source]

TIGRFAM:
TheSEED: see SACOL1891
PFAM:
Dim_A_B_barrel (CL0032) ABM; Antibiotic biosynthesis monooxygenase (PF03992; HMM-score: 22.2)

⊟Structure, modifications & cofactors[edit | edit source]

domains:
modifications:
cofactors:
effectors:

⊟Localization[edit | edit source]

⊞
PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
⊞
DeepLocPro: Cytoplasmic
- Cytoplasmic Score: 0.6648
- Cytoplasmic Membrane Score: 0.2753
- Cell wall & surface Score: 0.0014
- Extracellular Score: 0.0585
LocateP:
⊞
SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.016961
- TAT(Tat/SPI): 0.000155
- LIPO(Sec/SPII): 0.001289
predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

GI: 446660630 NCBI
RefSeq: WP_000737976 NCBI
UniProt: see SACOL1891

⊟Protein sequence[edit | edit source]

MKKLYTSYGTYGFLHQIKINNPTHQLFQFSASDTSVIFEETDGETVLKSPSIYEVIKEIGEFSEHHFYCAIFIPSTEDHAYQLEKKLISVDDNFRNFGGFKSYRLLRPAKGTTYKIYFGFADRHAYEDFKQSDAFNDHFSKDALSHYFGSSGQHSSYFERYLYPIKE

⊟Experimental data[edit | edit source]

experimentally validated: see SACOL1891
protein localization: see SACOL1891
quantitative data / protein copy number per cell: see SACOL1891
interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

regulator:

⊟Transcription pattern[edit | edit source]

S.aureus Expression Data Browser: data available for NCTC8325

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

Aureolib: see SACOL1891

⊟Protein stability[edit | edit source]

half-life: no data available

⊞Biological Material[edit | edit source]

⊞Other Information[edit | edit source]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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