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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS09190 [old locus tag: SACOL1793 ]
  • pan locus tag?: SAUPAN004410000
  • symbol: SACOL_RS09190
  • pan gene symbol?: —
  • synonym:
  • product: DUF1444 domain-containing protein

⊟Additional information (user-provided)[edit | edit source]

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL_RS09190 [old locus tag: SACOL1793 ]
  • symbol: SACOL_RS09190
  • product: DUF1444 domain-containing protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1841588..1842445
  • length: 858
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002951 (1841588..1842445) NCBI
  • BioCyc: SACOL_RS09190 BioCyc
  • MicrobesOnline: see SACOL1793

⊟Phenotype[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    ATGAATACCTTTCAAATGAGAGATAAATTAAAGGAACGTTTAAGCCATTTAGACGTTGAT
    TTTAAATTTAATCGTGAAGAAGAAACTTTGCGTATTTATCGAACAGATAATAACAAAGGT
    ATCACGATTAAACTTAACGCTATAGTCGCAAAATATGAAGATAAAAAAGAAAAAATTGTA
    GATGAAATTGTTTATTACGTTGATGAAGCTATTGCACAAATGGCAGATAAAACCCTTGAG
    AGTATATCATCTAGTCAAATTATGCCTGTCATTAGAGCGACTAGCTTTGATAAAAAAACT
    AAACAAGGTGTTCCTTTTATCTATGATGAGCATACTGCAGAAACAGCAGTTTATTATGCA
    GTCGATTTAGGGAAATCATATCGTCTAATTGACGAAAGCATGTTAGAGGATTTGAAGTTA
    ACTGAACAACAAATAAGAGAAATGTCTCTGTTTAATGTTAGAAAATTGTCAAATTCATAT
    ACGACTGATGAAGTAAAAGGTAATATTTTTTATTTTATTAACTCAAATGACGGGTATGAT
    GCAAGTAGGATACTAAATACTGCATTTTTAAATGAAATTGAGGCACAATGTCAAGGCGAA
    ATGCTCGTAGCAGTGCCACACCAAGATGTGTTAATTATTGCAGATATACGCAATAAAACA
    GGATATGATGTGATGGCACATTTAACAATGGAATTTTTCACTAAAGGTCTAGTTCCAATT
    ACATCATTATCCTTTGGATATAAACAGGGTCATCTTGAACCGATATTTATTTTAGGTAAA
    AATAATAAACAAAAAAGAGATCCAAACGTGATTCAGCGTTTAGAAGCAAATCGTCGTAAA
    TTTGATAAAGATAAATAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    858


⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL_RS09190 [old locus tag: SACOL1793 ]
  • symbol: SACOL_RS09190
  • description: DUF1444 domain-containing protein
  • length: 285
  • theoretical pI: 6.38465
  • theoretical MW: 33070.5
  • GRAVY: -0.494035

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: see SACOL1793
  • PFAM:
    no clan defined DUF1444; Protein of unknown function (DUF1444) (PF07285; HMM-score: 421.3)
    and 3 more
    CoV_NSP3_C; Coronavirus replicase NSP3, C-terminal (PF19218; HMM-score: 15.9)
    Asp23; Asp23 family, cell envelope-related function (PF03780; HMM-score: 13.7)
    IL17R_D_N; N-terminus of interleukin 17 receptor D (PF16742; HMM-score: 13.1)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9159
    • Cytoplasmic Membrane Score: 0.0453
    • Cell wall & surface Score: 0.0025
    • Extracellular Score: 0.0363
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.002135
    • TAT(Tat/SPI): 0.000218
    • LIPO(Sec/SPII): 0.000408
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MNTFQMRDKLKERLSHLDVDFKFNREEETLRIYRTDNNKGITIKLNAIVAKYEDKKEKIVDEIVYYVDEAIAQMADKTLESISSSQIMPVIRATSFDKKTKQGVPFIYDEHTAETAVYYAVDLGKSYRLIDESMLEDLKLTEQQIREMSLFNVRKLSNSYTTDEVKGNIFYFINSNDGYDASRILNTAFLNEIEAQCQGEMLVAVPHQDVLIIADIRNKTGYDVMAHLTMEFFTKGLVPITSLSFGYKQGHLEPIFILGKNNKQKRDPNVIQRLEANRRKFDKDK

⊟Experimental data[edit | edit source]

  • experimentally validated: see SACOL1793
  • protein localization: see SACOL1793
  • quantitative data / protein copy number per cell: see SACOL1793
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Additional information (user-provided)[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Other information (user-provided)[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]


⊟Relevant publications[edit | edit source]

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