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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS08210 [old locus tag: SACOL1610 ]
  • pan locus tag?: SAUPAN004134000
  • symbol: SACOL_RS08210
  • pan gene symbol?: sodA
  • synonym:
  • product: superoxide dismutase

⊟Additional information (user-provided)[edit | edit source]

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL_RS08210 [old locus tag: SACOL1610 ]
  • symbol: SACOL_RS08210
  • product: superoxide dismutase
  • replicon: chromosome
  • strand: -
  • coordinates: 1641100..1641699
  • length: 600
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002951 (1641100..1641699) NCBI
  • BioCyc: SACOL_RS08210 BioCyc
  • MicrobesOnline: see SACOL1610

⊟Phenotype[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    ATGGCTTTTGAATTACCAAAATTACCATACGCATTTGATGCATTAGAACCACATTTTGAC
    AAAGAAACTATGGAAATTCACCATGACAGACATCATAACACGTATGTTACGAAATTAAAT
    GCTGCAGTAGAAGGTACAGATTTAGAATCTAAATCTATTGAAGAAATTGTTGCTAATTTA
    GACAGTGTACCAGCTAACATCCAAACTGCTGTACGTAATAATGGCGGTGGACATTTAAAC
    CATTCATTATTCTGGGAGTTACTTTCACCAAACTCAGAAGAAAAAGGTACTGTAGTAGAA
    AAAATTAAAGAACAATGGGGTTCTTTAGAAGAATTTAAAAAAGAATTTGCTGACAAAGCA
    GCTGCACGCTTTGGTTCAGGTTGGGCTTGGTTAGTCGTAAACAATGGCCAGTTAGAAATT
    GTGACTACACCAAACCAAGATAATCCATTAACTGAGGGTAAAACACCTATTTTAGGTTTA
    GACGTATGGGAACACGCTTATTACCTAAAATATCAAAACAAACGCCCTGACTACATTGGC
    GCATTTTGGAATGTAGTTAACTGGGAAAAAGTTGACGAATTATATAATGCAACAAAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600


⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL_RS08210 [old locus tag: SACOL1610 ]
  • symbol: SACOL_RS08210
  • description: superoxide dismutase
  • length: 199
  • theoretical pI: 4.8565
  • theoretical MW: 22711.2
  • GRAVY: -0.575879

⊟Function[edit | edit source]

  • reaction:
    EC 1.15.1.1?  ExPASy
    Superoxide dismutase 2 superoxide + 2 H+ = O2 + H2O2
  • TIGRFAM:
  • TheSEED: see SACOL1610
  • PFAM:
    no clan defined Sod_Fe_C; Iron/manganese superoxide dismutases, C-terminal domain (PF02777; HMM-score: 148)
    Sod_Fe_N; Iron/manganese superoxide dismutases, alpha-hairpin domain (PF00081; HMM-score: 119.1)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors: Fe2+, Mn2+
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Extracellular
    • Cytoplasmic Score: 0.01
    • Cytoplasmic Membrane Score: 0.09
    • Cellwall Score: 0.18
    • Extracellular Score: 9.72
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9528
    • Cytoplasmic Membrane Score: 0.0004
    • Cell wall & surface Score: 0.0014
    • Extracellular Score: 0.0454
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.002208
    • TAT(Tat/SPI): 0.0003
    • LIPO(Sec/SPII): 0.000241
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MAFELPKLPYAFDALEPHFDKETMEIHHDRHHNTYVTKLNAAVEGTDLESKSIEEIVANLDSVPANIQTAVRNNGGGHLNHSLFWELLSPNSEEKGTVVEKIKEQWGSLEEFKKEFADKAAARFGSGWAWLVVNNGQLEIVTTPNQDNPLTEGKTPILGLDVWEHAYYLKYQNKRPDYIGAFWNVVNWEKVDELYNATK

⊟Experimental data[edit | edit source]

  • experimentally validated: see SACOL1610
  • protein localization: see SACOL1610
  • quantitative data / protein copy number per cell: see SACOL1610
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Other information (user-provided)[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]


⊟Relevant publications[edit | edit source]

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