From AureoWiki
Jump to navigation Jump to search

NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS06485 [old locus tag: SACOL1270 ]
  • pan locus tag?: SAUPAN003551000
  • symbol: SACOL_RS06485
  • pan gene symbol?: hslV
  • synonym: clpQ
  • product: HslU--HslV peptidase proteolytic subunit

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL_RS06485 [old locus tag: SACOL1270 ]
  • symbol: SACOL_RS06485
  • product: HslU--HslV peptidase proteolytic subunit
  • replicon: chromosome
  • strand: +
  • coordinates: 1281432..1281977
  • length: 546
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002951 (1281432..1281977) NCBI
  • BioCyc: SACOL_RS06485 BioCyc
  • MicrobesOnline: see SACOL1270

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    ATGAGTAATACAACATTACATGCAACAACAATTTATGCTGTAAGACATAATGGGAAAGCA
    GCTATGGCTGGAGATGGGCAAGTAACGCTTGGTCAACAAGTCATCATGAAACAAACGGCA
    AGAAAAGTGCGACGTTTATATGAAGGTAAAGTGTTAGCTGGTTTCGCAGGTAGTGTAGCA
    GATGCGTTTACGTTATTTGAAAAATTCGAAACAAAATTACAACAGTTTAGTGGTAACTTA
    GAAAGAGCTGCTGTTGAATTGGCACAAGAATGGCGAGGCGATAAACAATTACGTCAATTA
    GAAGCTATGCTAATTGTAATGGATAAAGATGCTATTTTAGTTGTCAGTGGAACTGGCGAA
    GTTATTGCTCCAGATGATGACCTTATCGCTATTGGATCAGGAGGCAACTACGCATTAAGC
    GCAGGACGTGCATTGAAACGCCATGCATCGCATTTGTCTGCTGAAGAAATGGCATATGAG
    AGCTTGAAAGTAGCGGCTGATATTTGTGTCTTTACCAACGATAATATTGTTGTCGAAACA
    CTATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    546

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL_RS06485 [old locus tag: SACOL1270 ]
  • symbol: SACOL_RS06485
  • description: HslU--HslV peptidase proteolytic subunit
  • length: 181
  • theoretical pI: 6.11631
  • theoretical MW: 19572.2
  • GRAVY: -0.0154696

⊟Function[edit | edit source]

  • reaction:
    EC 3.4.25.2?  ExPASy
    HslU--HslV peptidase ATP-dependent cleavage of peptide bonds with broad specificity
  • TIGRFAM:
    Genetic information processing Protein fate Degradation of proteins, peptides, and glycopeptides ATP-dependent protease HslVU, peptidase subunit (TIGR03692; EC 3.4.25.2; HMM-score: 276.6)
    and 2 more
    Genetic information processing Protein fate Degradation of proteins, peptides, and glycopeptides proteasome endopeptidase complex, archaeal, beta subunit (TIGR03634; EC 3.4.25.1; HMM-score: 29.2)
    Genetic information processing Protein fate Degradation of proteins, peptides, and glycopeptides proteasome, beta subunit (TIGR03690; EC 3.4.25.1; HMM-score: 25.9)
  • TheSEED: see SACOL1270
  • PFAM:
    NTN (CL0052) Proteasome; Proteasome subunit (PF00227; HMM-score: 105.6)
    and 1 more
    no clan defined TSKS; Testis-specific serine kinase substrate (PF15358; HMM-score: 12.2)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.97
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0.01
    • Extracellular Score: 0.02
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.966
    • Cytoplasmic Membrane Score: 0.0058
    • Cell wall & surface Score: 0.0002
    • Extracellular Score: 0.028
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.011612
    • TAT(Tat/SPI): 0.001933
    • LIPO(Sec/SPII): 0.00229
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MSNTTLHATTIYAVRHNGKAAMAGDGQVTLGQQVIMKQTARKVRRLYEGKVLAGFAGSVADAFTLFEKFETKLQQFSGNLERAAVELAQEWRGDKQLRQLEAMLIVMDKDAILVVSGTGEVIAPDDDLIAIGSGGNYALSAGRALKRHASHLSAEEMAYESLKVAADICVFTNDNIVVETL

⊟Experimental data[edit | edit source]

  • experimentally validated: see SACOL1270
  • protein localization: see SACOL1270
  • quantitative data / protein copy number per cell: see SACOL1270
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://fungenwikiserver.biologie.uni-greifswald.de/aureowiki/index.php?title=SACOL_RS06485&oldid=77205"