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NCBI: 02-MAR-2017
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus COL
- locus tag: SACOL_RS01710 [old locus tag: SACOL0340 ]
- pan locus tag?: SAUPAN001443000
- symbol: SACOL_RS01710
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SACOL_RS01710 [old locus tag: SACOL0340 ]
- symbol: SACOL_RS01710
- product: hypothetical protein
- replicon: chromosome
- strand: +
- coordinates: 364084..364779
- length: 696
- essential: unknown
⊟Accession numbers[edit | edit source]
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
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661ATGCCAAAAATTACTAGTTATATCACTCAAGACGACGGCACAACAACAGTTGTCATCTCG
GGTGTCGAATTAGGCAATAAAGAAACATTACTACTTGATAACGGGTTTGATGTAGAAGTA
GATGTAAACGTTATAGATCCGTTTCAAATTACCGGCAAGCAACGTCGAAAAATATTCGCG
CTTGTCAAAGACATAGAAGAACATACAGGTCAACCAATGGACTATATGAGACATATGTTC
ATCGAGTTTGTAAGAACGTACTACGGCTATGATGAACGTATTTCGCTAAGTAATTGTACG
AGAACACAAGCAAGTCAAATCATTGAAGCAACGCTTGACTGGACGTTCTACAATGACATA
CCACTTAGCTACAAAACGAGTAATCTACTGAAACAAGATAAATCGTTCTTATACTGGTCA
ACTGTTAACCGCAACTGTGTAATATGCGGAAAGCCTCACGCTGACCTAGCACATTATGAA
GCGGTTGGCAGAGGCATGAACAGAAATAAGATGAATCACTATGACAAACATGTATTAGCG
TTATGTCGCGAACATCACAATGAGCAACATGCGATTGGCGTTAAGTCGTTTGATGATAAA
TATCACTTGCATGACTCGTGGATAAAAGTTGATGAGAGGCTCAACAAAATGCTGAAAGGA
GAAGACAATGGGAGAAGTATCGTGGATAAAACTTAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SACOL_RS01710 [old locus tag: SACOL0340 ]
- symbol: SACOL_RS01710
- description: hypothetical protein
- length: 231
- theoretical pI: 6.73818
- theoretical MW: 26823.2
- GRAVY: -0.584848
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED: see SACOL0340
- PFAM: His-Me_finger (CL0263) HNHc_6; Putative HNHc nuclease (PF16784; HMM-score: 271.1)and 1 moreDUF968; Protein of unknown function (DUF968) (PF06147; HMM-score: 26.8)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.0016
- TAT(Tat/SPI): 0.000101
- LIPO(Sec/SPII): 0.000429
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MPKITSYITQDDGTTTVVISGVELGNKETLLLDNGFDVEVDVNVIDPFQITGKQRRKIFALVKDIEEHTGQPMDYMRHMFIEFVRTYYGYDERISLSNCTRTQASQIIEATLDWTFYNDIPLSYKTSNLLKQDKSFLYWSTVNRNCVICGKPHADLAHYEAVGRGMNRNKMNHYDKHVLALCREHHNEQHAIGVKSFDDKYHLHDSWIKVDERLNKMLKGEDNGRSIVDKT
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.