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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS00795 [old locus tag: SACOL0157 ]
  • pan locus tag?: SAUPAN001009000
  • symbol: SACOL_RS00795
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Additional information (user-provided)[edit | edit source]

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL_RS00795 [old locus tag: SACOL0157 ]
  • symbol: SACOL_RS00795
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 174717..175229
  • length: 513
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002951 (174717..175229) NCBI
  • BioCyc: SACOL_RS00795 BioCyc
  • MicrobesOnline: see SACOL0157

⊟Phenotype[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    ATGACATTATTTTTATTAGAAGCTAACAATCTTGATTTTGCATCAACGAAAGAAGAACTA
    GAAGCAAAGGCAGCATCACTATCTACGAAGACAATTCCAACATTAATTGAAGTACAAGCT
    ACTGAAAATTTAACTCATGGTTATTTTATTGTGGAAGCAAATGACGAAGCAGAAGCTAAA
    CAATTTTTAACAGAAGCAGATATTAGTATTCAATTAGTCAAAGAAGTACGCTTAGTTGGT
    AAAGATTTAGATGAAGTTAAAAATGGTGATGCACATGTTGATTACCTTGTAACTTGGAAC
    ATTCCGGAAGGCATTACGATGGATCAATATTTAGCACGTAAAAAGAAAAATTCTGTTCAT
    TATGAAGAAGTGCCAGAAGTTGAATTTAAACGCACATATGTATGTGAAGATATGTCTAAA
    TGTATTTGTTTATACAACGCACCTGATGAAGAAGCGGTACGTCGCGCGCGCAAAGCAGTT
    GATACACCGATTGATGGCATCGAAAAACTTTAA
    60
    120
    180
    240
    300
    360
    420
    480
    513


⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL_RS00795 [old locus tag: SACOL0157 ]
  • symbol: SACOL_RS00795
  • description: hypothetical protein
  • length: 170
  • theoretical pI: 4.40041
  • theoretical MW: 19256.7
  • GRAVY: -0.352941

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: see SACOL0157
  • PFAM:
    Dim_A_B_barrel (CL0032) SCO4226-like; Nickel responsive protein SCO4226-like (PF14026; HMM-score: 86.6)
    and 3 more
    DUF3303; Domain of unknown function (DUF3303) (PF11746; HMM-score: 16.4)
    PDDEXK (CL0236) Mrr_cat; Restriction endonuclease (PF04471; HMM-score: 12.8)
    Hybrid (CL0105) LAL_C2; L-amino acid ligase C-terminal domain 2 (PF18603; HMM-score: 10)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9546
    • Cytoplasmic Membrane Score: 0.0216
    • Cell wall & surface Score: 0.0002
    • Extracellular Score: 0.0235
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.005292
    • TAT(Tat/SPI): 0.000623
    • LIPO(Sec/SPII): 0.000692
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MTLFLLEANNLDFASTKEELEAKAASLSTKTIPTLIEVQATENLTHGYFIVEANDEAEAKQFLTEADISIQLVKEVRLVGKDLDEVKNGDAHVDYLVTWNIPEGITMDQYLARKKKNSVHYEEVPEVEFKRTYVCEDMSKCICLYNAPDEEAVRRARKAVDTPIDGIEKL

⊟Experimental data[edit | edit source]

  • experimentally validated: see SACOL0157
  • protein localization: see SACOL0157
  • quantitative data / protein copy number per cell: see SACOL0157
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Other information (user-provided)[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]


⊟Relevant publications[edit | edit source]

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