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NCBI: 10-JUN-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL2181 [new locus tag: SACOL_RS11475 ]
  • pan locus tag?: SAUPAN005586000
  • symbol: lacE
  • pan gene symbol?: lacE
  • synonym:
  • product: PTS system, lactose-specific IIBC components

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL2181 [new locus tag: SACOL_RS11475 ]
  • symbol: lacE
  • product: PTS system, lactose-specific IIBC components
  • replicon: chromosome
  • strand: -
  • coordinates: 2263934..2265652
  • length: 1719
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    ATGACAATGATGCAAAAATTGATCGCACAAATTGAAAAAGGGAAGCCATTTTTCGAGAAA
    TTATCACGTAACATATATTTAAGAGCCATCCGTGATGGATTTATTTCTGCAATGCCTGTC
    ATCTTATTCTCAAGTATCTTTCTATTAATTGCATATGTGCCAAATATATTTGGTTTTAAA
    TGGGATAAAGGCATGGAAGCCATTTTAATGAAACCATATAACTATACGATGGGGCTTGTA
    GCATTTTTAGTAGCAGGAACGACAGCGAAATCTTTAACAGATTCATTTAACCGTAAGCTA
    GAAAGTACAAATCAAATTAACTTTATTTCTACAATGCTAGCAGCGATGTGTGGATTCTTG
    TTCTTAGCTTCTGATCCAGCCAAAGATGGTGGATTCTTAAGTGCATTTATGGGAACTAAA
    GGTTTATTAACAGCATTCTTATCAGCATTTGTAACTGTTATTGTTTATAACTTCTGTGTG
    AAGCGCAATATTACAATTAAAATGCCGAAAGAAGTACCGCCGAATATTTCACAAGTATTT
    AAGGACTTAATTCCATTTTCAGCGGTAATCATCATTCTTTATGCATTAGATTTAGTCATT
    CGCAACAGCTTTAAATCAAATGTAGCGGAAGGTATTTTAAAATTATTCGAACCATTATTT
    ACAGCAGCAGATGGATGGATTGGTGTCACAATTATCTTTGGTGCCTTTGCATTATTCTGG
    TTTGTAGGTATTCATGGTCCGTCAATTGTAGAGCCAGCAATTGCAGCCATTACATATGCG
    AATATCGAAGCGAACTTCAAGTTGCTTCAAGCTGGAGAACACGCAGATAAAATTATTACA
    TCAGGTACACAAATGTTTATCGTTACATTTGGAGGTACGGGTGCAACATTGGTCGTCCCG
    TTCATGTTTATGTGGATGACGAAATCTAAACGAAACAAAGCGATTGGACGTGCATCAGTT
    GTACCAACATTCTTTGGTGTAAACGAACCAATTTTATTTGGTGCACCACTAGTATTGAAT
    CCTGTGTTCTTTATTCCATTTGTATTAGCACCAATTGTTAACGTATGGATTTTCAAACTT
    TTCGTTGAAGTGTTAGGAATGAATAGTTTTAGTGTGAATTTACCTTGGACAACACCAGGT
    CCATTGGGCATTATCATGGGTACAGGTTTTGGTTTATGGTCATTCGTACTAGCTATTACT
    TTGATTGTTGTAGATATTATTATTTACTACCCATTCCTAAAAGTTTATGATAGTGAAATT
    CTTGATGAAGAAGAAGGACGTAAAGAAAGTAATTCAGATTTAAAAGAAAAAGTTGCAGCA
    AACTTTGATACGAAAAAAGCTGATTCAATTTTAGCGGCAAGTGGTGTATCAGACGATGCA
    GCTAAAGCTTCAAATATCACAGAACAAACAAATGTCTTAGTACTTTGTGCCGGTGGTGGT
    ACAAGTGGATTATTAGCCAATGCACTTAATAAAGCAGCTGAAGAATATCATGTGCCAGTG
    AAAGCGGCAGCTGGCGGATATGGCGCACATATGGACATTATGAAAGAGTACCAATTAATC
    ATTTTAGCGCCACAAGTTGCGTCTAACTATGAAGATATTAAGCAAGATACAGATAGATTA
    GGTATTAAATTAGCGAAGACTCAAGGTGCTGAATATATCAAATTGACACGAGATGGCCAA
    GCAGCCCTTGATTTCGTTCAACAACAATTTGAAAATTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1680
    1719

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL2181 [new locus tag: SACOL_RS11475 ]
  • symbol: LacE
  • description: PTS system, lactose-specific IIBC components
  • length: 572
  • theoretical pI: 7.48602
  • theoretical MW: 62664.1
  • GRAVY: 0.443007

⊟Function[edit | edit source]

  • reaction:
    EC 2.7.1.207?  ExPASy
    Protein-N(pi)-phosphohistidine--lactose phosphotransferase [Protein]-N(pi)-phospho-L-histidine + lactose(Side 1) = [protein]-L-histidine + lactose 6'-phosphate(Side 2)
  • TIGRFAM:
    Metabolism Transport and binding proteins Carbohydrates, organic alcohols, and acids PTS system, lactose-specific IIC component (TIGR00394; EC 2.7.1.69; HMM-score: 771.4)
    Signal transduction Signal transduction PTS PTS system, lactose-specific IIC component (TIGR00394; EC 2.7.1.69; HMM-score: 771.4)
    and 8 more
    Metabolism Transport and binding proteins Carbohydrates, organic alcohols, and acids PTS system, cellobiose-specific IIC component (TIGR00359; EC 2.7.1.69; HMM-score: 267.3)
    Signal transduction Signal transduction PTS PTS system, cellobiose-specific IIC component (TIGR00359; EC 2.7.1.69; HMM-score: 267.3)
    Metabolism Transport and binding proteins Carbohydrates, organic alcohols, and acids PTS system, lactose/cellobiose family IIC component (TIGR00410; EC 2.7.1.69; HMM-score: 267.3)
    Signal transduction Signal transduction PTS PTS system, lactose/cellobiose family IIC component (TIGR00410; EC 2.7.1.69; HMM-score: 267.3)
    Metabolism Transport and binding proteins Carbohydrates, organic alcohols, and acids PTS system, lactose/cellobiose family IIB component (TIGR00853; HMM-score: 205.3)
    Signal transduction Signal transduction PTS PTS system, lactose/cellobiose family IIB component (TIGR00853; HMM-score: 205.3)
    PTS system, beta-glucoside-specific IIABC component (TIGR01995; EC 2.7.1.69; HMM-score: 35.2)
    PTS system, sucrose-specific IIBC component (TIGR01996; EC 2.7.1.69; HMM-score: 26.3)
  • TheSEED  :
    • PTS system, lactose-specific IIB component (EC 2.7.1.69)
    • PTS system, lactose-specific IIC component (EC 2.7.1.69)
    Carbohydrates Di- and oligosaccharides Lactose and Galactose Uptake and Utilization  PTS system, lactose-specific IIB component (EC 2.7.1.69)
    and 1 more
    Carbohydrates Di- and oligosaccharides Lactose and Galactose Uptake and Utilization  PTS system, lactose-specific IIC component (EC 2.7.1.69)
  • PFAM:
    PTS_EIIC (CL0493) PTS_EIIC; Phosphotransferase system, EIIC (PF02378; HMM-score: 277.3)
    and 2 more
    Phosphatase (CL0031) PTS_IIB; PTS system, Lactose/Cellobiose specific IIB subunit (PF02302; HMM-score: 38.9)
    PFK (CL0240) DAGK_cat; Diacylglycerol kinase catalytic domain (PF00781; HMM-score: 11.3)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 9
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 0.9993
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.0007
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0.17
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 0
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.001502
    • TAT(Tat/SPI): 0.000111
    • LIPO(Sec/SPII): 0.001235
  • predicted transmembrane helices (TMHMM): 10

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MTMMQKLIAQIEKGKPFFEKLSRNIYLRAIRDGFISAMPVILFSSIFLLIAYVPNIFGFKWDKGMEAILMKPYNYTMGLVAFLVAGTTAKSLTDSFNRKLESTNQINFISTMLAAMCGFLFLASDPAKDGGFLSAFMGTKGLLTAFLSAFVTVIVYNFCVKRNITIKMPKEVPPNISQVFKDLIPFSAVIIILYALDLVIRNSFKSNVAEGILKLFEPLFTAADGWIGVTIIFGAFALFWFVGIHGPSIVEPAIAAITYANIEANFKLLQAGEHADKIITSGTQMFIVTFGGTGATLVVPFMFMWMTKSKRNKAIGRASVVPTFFGVNEPILFGAPLVLNPVFFIPFVLAPIVNVWIFKLFVEVLGMNSFSVNLPWTTPGPLGIIMGTGFGLWSFVLAITLIVVDIIIYYPFLKVYDSEILDEEEGRKESNSDLKEKVAANFDTKKADSILAASGVSDDAAKASNITEQTNVLVLCAGGGTSGLLANALNKAAEEYHVPVKAAAGGYGAHMDIMKEYQLIILAPQVASNYEDIKQDTDRLGIKLAKTQGAEYIKLTRDGQAALDFVQQQFEN

⊟Experimental data[edit | edit source]

  • experimentally validated: PeptideAtlas
  • protein localization: Integral membrane [1]
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

  1. ↑ Dörte Becher, Kristina Hempel, Susanne Sievers, Daniela Zühlke, Jan Pané-Farré, Andreas Otto, Stephan Fuchs, Dirk Albrecht, Jörg Bernhardt, Susanne Engelmann, Uwe Völker, Jan Maarten van Dijl, Michael Hecker
    A proteomic view of an important human pathogen--towards the quantification of the entire Staphylococcus aureus proteome.
    PLoS One: 2009, 4(12);e8176
    [PubMed:19997597] [WorldCat.org] [DOI] (I e)

⊟Relevant publications[edit | edit source]

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