PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 26-AUG-2013

⊟Summary

• organism: Staphylococcus aureus N315
• locus tag: SA2156 [new locus tag: SA_RS12380 ]
• pan locus tag^?: SAUPAN005878000
• symbol: SA2156
• pan gene symbol^?: lctP2
• synonym:
• product: hypothetical protein

⊟Genome View

⊟Gene

⊟General

• type: CDS
• locus tag: SA2156 [new locus tag: SA_RS12380 ]
• symbol: SA2156
• product: hypothetical protein
• replicon: chromosome
• strand: -
• coordinates: 2421937..2423535
• length: 1599
• essential: yes DEG other strains

⊟Accession numbers

• Gene ID: 1125084 NCBI
• RefSeq: NP_375479 NCBI
• BioCyc: see SA_RS12380
• MicrobesOnline: 104505 MicrobesOnline

⊟Phenotype

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⊟DNA sequence

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  ATGTTAGTAAATACGTTTAACCCATTTGATAATTTATTATTATCGTCTTTAATTGCAGCA
  ATACCGATTGTACTGTTTTTACTATGTTTAACTGTTTTTAAAATGAAAGGTATTTATGCA
  GCTATTACAACACTTGTTGTAACATTACTAATTGCAATACCATTTTTCAAATTGCCAGTT
  GGTATCGCTTCTGGTGCAGTAGTCGAAGGTTTCTTCCAAGGTATCATTCCGATTGGCTAT
  ATCGTTATGATGGCAGTATTGTTATACAAAATTACTGTTGAATCTGGACAATTTTTAACA
  ATTCAAGATAGTATTACAAATATTTCACAAGACCAACGTATTCAAGTTTTACTTATTGGA
  TTTGCATTCAACGCATTTTTAGAAGGTGCAGCAGGATTTGGTGTACCAATTGCAATTTGT
  GCACTTTTATTAACACAATTAGGATTTAATCCATTAAAAGCTGCGATGTTATGTTTAGTC
  GCAAATGCAGCGTCTGGTGCTTTTGGTGCGATTGGTATCCCTGTAGGTGTTGTAGAAACG
  TTGAAATTACCTGGAGATGTTTCAGTATTAGGTGTTTCTCAATCAGCAACTTTAACATTG
  GCAATCATAAATTTCATTATTCCATTCTTACTTATCTTTATTATTGATGGTTTTAGAGGT
  GTTAAAGAAACATTACCAGCAATTTTAGTAGTTTCAATCACTTATACACTTACTCAAGGA
  TTATTAACTGTATTCAGTGGACCTGAATTAGCAGATATTATTCCACCGTTATTAACAATG
  TTAGCATTAGCAGTATTTTCTAAAAAATTCCAACCAAAACACATTTATCGTGTTAATAAA
  GATGAAGAAATTGAACCTGCAAAAGCACATTCTGCAAAAGCAGTATTACATGCATGGAGC
  CCATTCATTGTATTAACAGTCATTGTAATGATTTGGAGTGCGCCATTCTTTAAAAACTTA
  TTCTTACCAAATGGTGCTTTATCATCATTAGTATTTAAATTCAACTTACCTGGAACAATC
  AGCGAAGTTACGCATAAACCATTAGTATTGACTTTAAATATTATTGGACAAACAGGTACA
  GCTATTTTATTAACTATTATTATTACAATTTTAATGTCTAAAAAGGTTAACTTTAAAGAT
  GCTGTTAGATTATTCGGCGTTACATTTAAAGAGTTGTGGTTACCAGTTCTTACAATTTGT
  TTCATCTTAGCAATCTCTAAAATCACAACTTATGGTGGTTTAAGTGCAGCAATGGGTCAA
  GGTATAGCTAAAGCAGGTAATGTCTTCCCAGTTCTATCACCAATCTTAGGTTGGATAGGT
  GTGTTTATGACAGGATCAGTTGTAAATAACAATTCATTATTTGCACCAATTCAAGCTTCT
  GTTGCACAACAAATTGGAACAAGTGGTTCACTTCTTGTATCTGCTAATACAGTTGGTGGT
  GTAGCGGCAAAATTGATTTCACCACAATCAATTGCAATTGCAACTGCAGCAGTAAAACAA
  GTTGGTAAGGAATCAGAATTATTAAAAATGACATTGAAATACAGTGTATGTTTACTAATA
  TTCATCTGTATTTGGACTTTCATCTTGTCATTATTATAA
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⊟Protein

⊟General

• locus tag: SA2156 [new locus tag: SA_RS12380 ]
• symbol: SA2156
• description: hypothetical protein
• length: 532
• theoretical pI: 9.63197
• theoretical MW: 56683.9
• GRAVY: 1.02575

⊟Function

• TIGRFAM:
  Metabolism Transport and binding proteins Carbohydrates, organic alcohols, and acids transporter, lactate permease (LctP) family (TIGR00795; HMM-score: 529.2)
• TheSEED  :
  • L-lactate permease
• PFAM:
  IT (CL0182) Lactate_perm; L-lactate permease (PF02652; HMM-score: 534.2)

⊟Structure, modifications & cofactors

• domains:
• modifications:
• cofactors:
• effectors:

⊟Localization

• PSORTb: Cytoplasmic Membrane
  • Cytoplasmic Score: 0
  • Cytoplasmic Membrane Score: 10
  • Cellwall Score: 0
  • Extracellular Score: 0
  • Internal Helices: 13
• LocateP: Multi-transmembrane
  • Prediction by SwissProt Classification: Membrane
  • Pathway Prediction: Sec-(SPI)
  • Intracellular possibility: 0.17
  • Signal peptide possibility: 0.5
  • N-terminally Anchored Score: 1
  • Predicted Cleavage Site: No CleavageSite
• SignalP: no predicted signal peptide
  • SP(Sec/SPI): 0.002225
  • TAT(Tat/SPI): 0.000303
  • LIPO(Sec/SPII): 0.002796
• predicted transmembrane helices (TMHMM): 13

⊟Accession numbers

• GI: 15927946 NCBI
• RefSeq: NP_375479 NCBI
• UniProt: A0A0H3JNQ8 UniProt

⊟Protein sequence

• MLVNTFNPFDNLLLSSLIAAIPIVLFLLCLTVFKMKGIYAAITTLVVTLLIAIPFFKLPVGIASGAVVEGFFQGIIPIGYIVMMAVLLYKITVESGQFLTIQDSITNISQDQRIQVLLIGFAFNAFLEGAAGFGVPIAICALLLTQLGFNPLKAAMLCLVANAASGAFGAIGIPVGVVETLKLPGDVSVLGVSQSATLTLAIINFIIPFLLIFIIDGFRGVKETLPAILVVSITYTLTQGLLTVFSGPELADIIPPLLTMLALAVFSKKFQPKHIYRVNKDEEIEPAKAHSAKAVLHAWSPFIVLTVIVMIWSAPFFKNLFLPNGALSSLVFKFNLPGTISEVTHKPLVLTLNIIGQTGTAILLTIIITILMSKKVNFKDAVRLFGVTFKELWLPVLTICFILAISKITTYGGLSAAMGQGIAKAGNVFPVLSPILGWIGVFMTGSVVNNNSLFAPIQASVAQQIGTSGSLLVSANTVGGVAAKLISPQSIAIATAAVKQVGKESELLKMTLKYSVCLLIFICIWTFILSLL

⊟Experimental data

• experimentally validated: data available for COL, NCTC8325
• protein localization: data available for COL
• quantitative data / protein copy number per cell:
• interaction partners:

⊟Expression & Regulation

⊟Operon

• MicrobesOnline: no polycistronic organisation predicted

⊟Regulation

• regulator: Rex* (repression) regulon

  Rex*

  (TF)

  important in Energy metabolism; RegPrecise

⊟Transcription pattern

• S.aureus Expression Data Browser: data available for NCTC8325

⊟Protein synthesis (provided by Aureolib)

• Aureolib: no data available

⊟Protein stability

• half-life: no data available

⊟Biological Material

⊟Mutants

⊟Expression vector

⊟lacZ fusion

⊟GFP fusion

⊟two-hybrid system

⊟FLAG-tag construct

⊟Antibody

⊟Other Information

You are kindly invited to share additional interesting facts.

⊟Literature

⊟References

⊟Relevant publications