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NCBI: 26-AUG-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA1727 [new locus tag: SA_RS09915 ]
  • pan locus tag?: SAUPAN004944000
  • symbol: SA1727
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Additional information (user-provided)[edit | edit source]

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA1727 [new locus tag: SA_RS09915 ]
  • symbol: SA1727
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1978090..1978692
  • length: 603
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    ATGTCATTCGTAACAGAAAATCCATGGTTAATGGTACTAACTATATTTATCATTAACGTT
    TGTTATGTAACGTTTTTAACGATGCGAACAATTTTAACGTTGAAAGGTTATCGTTATATT
    GCTGCATCAGTTAGTTTTTTAGAAGTATTAGTTTATATCGTTGGTTTAGGTTTGGTTATG
    TCTAATTTAGACCATATTCAAAATATTATTGCCTACGCATTTGGTTTTTCAATAGGTATC
    ATTGTTGGTATGAAAATAGAAGAAAAACTGGCATTAGGTTATACAGTTGTAAATGTAACT
    TCAGCAGAATATGAGTTAGATTTACCGAATGAACTTCGAAATTTAGGATATGGCGTTACG
    CACTATGCTGCGTTTGGTAGAGATGGTAGTCGTATGGTGATGCAAATTTTAACACCAAGA
    AAATATGAACGTAAATTGATGGATACGATAAAAAATTTAGATCCGAAAGCATTTATCATT
    GCGTATGAACCTCGAAACATACATGGTGGATTCTGGACTAAAGGCATTCGTCGTAGAAAG
    CTTAAAGATTATGAACCAGAAGAACTGGAAAGTGTAGTAGAACATGAAATTCAAAGTAAA
    TGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    603


⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA1727 [new locus tag: SA_RS09915 ]
  • symbol: SA1727
  • description: hypothetical protein
  • length: 200
  • theoretical pI: 8.36834
  • theoretical MW: 22954.8
  • GRAVY: 0.166

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED  :
    • FIG01225759: possible membrane protein
  • PFAM:
    no clan defined DUF5698; Domain of unknown function (DUF5698) (PF18955; HMM-score: 74.6)
    and 2 more
    GlnB-like (CL0089) DUF2179; Uncharacterized protein conserved in bacteria (DUF2179) (PF10035; HMM-score: 38.3)
    no clan defined LMBR1; LMBR1-like membrane protein (PF04791; HMM-score: 13.6)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.32
    • Cytoplasmic Membrane Score: 9.55
    • Cellwall Score: 0.12
    • Extracellular Score: 0.01
    • Internal Helices: 2
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.0002
    • Cytoplasmic Membrane Score: 0.9971
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.0026
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0.17
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.002146
    • TAT(Tat/SPI): 0.000097
    • LIPO(Sec/SPII): 0.00602
  • predicted transmembrane helices (TMHMM): 3

⊟Accession numbers[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MSFVTENPWLMVLTIFIINVCYVTFLTMRTILTLKGYRYIAASVSFLEVLVYIVGLGLVMSNLDHIQNIIAYAFGFSIGIIVGMKIEEKLALGYTVVNVTSAEYELDLPNELRNLGYGVTHYAAFGRDGSRMVMQILTPRKYERKLMDTIKNLDPKAFIIAYEPRNIHGGFWTKGIRRRKLKDYEPEELESVVEHEIQSK

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Additional information (user-provided)[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Other information (user-provided)[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]


⊟Relevant publications[edit | edit source]

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