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NCBI: 26-AUG-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA1124 [new locus tag: SA_RS06355 ]
  • pan locus tag?: SAUPAN003583000
  • symbol: SA1124
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Additional information (user-provided)[edit | edit source]

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA1124 [new locus tag: SA_RS06355 ]
  • symbol: SA1124
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 1277180..1278007
  • length: 828
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    ATGACAGTTGCAGAGAAAAAAGAATGGTACCTAGAATACGAAATTGAAATTAATAGACCG
    GGTCTTTTAGGTGATGTATCTAGTTTATTAGGTATGTTAGGTATAAGTATTGTTACAATT
    AATGGTGTTGATCAAGGTAAACGAGGCCTTTTAATTAAAACAGACAATCTTGAAAAAGTT
    GAACGTTTTGAGCAAATAGCTCGTGGTATAAATGAAATTGAAATAACAAAGCTTAAAAAA
    CCAGAATTAAGAGACCGTCTTGCAGTTAGACATGGTAGATATATTGAGCAAGATGCAAAA
    GATAAGAAAACCTTTCGATTTGAGCGTGAAGATTTAGGCTTGTTAGTAGACTTTTTAGCT
    GAATTGTTCAAAGAAGAAGGTCATAAGTTGATTGGCATTAGAGGTATGCCACGGGTTGGT
    AAAACTGAATCAATTGTTGCGGGAAGTGTTTGTGCACATAAGAGATGGTTATTTATTAGT
    TCTACTTTAATAAAACAAACTGTACGTAGCTCTCTAATTAAAGGGGAATATGATGCCAAT
    CATGTATACATTATTGATGGTGCAGTTACTGCCAGAGAATCTAATCCAAAACATCAAGAG
    CTTGTTAACGAAGTTATGACGTTACCATCAATCAAAGTCGTTGAACATCCAGATTTATTT
    GTTGAAACAAGTACTTGTACAATGGAAGATTTTGACTATATTATCGAATTGAGAGAAAAT
    GAAAATCAAGAAATACATTACGAAGAAATGAAGAAACAGACAGTCCAAAGTAAGAATAAT
    TTAGATTTTGGAGATCCGTTTGGTGGTGGTTTTGGTTTCTTCGAGTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    828


⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA1124 [new locus tag: SA_RS06355 ]
  • symbol: SA1124
  • description: hypothetical protein
  • length: 275
  • theoretical pI: 5.31204
  • theoretical MW: 31477.8
  • GRAVY: -0.397818

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED  :
    • FIG00003568: ACT domain protein
  • PFAM:
    no clan defined DUF3388; Protein of unknown function (DUF3388) (PF11868; HMM-score: 334.1)
    and 3 more
    ACT (CL0070) ACT; ACT domain (PF01842; HMM-score: 23.2)
    P-loop_NTPase (CL0023) AAA_18; AAA domain (PF13238; HMM-score: 14.8)
    Peptidase_MA (CL0126) DUF4344; Putative metallopeptidase (PF14247; HMM-score: 14.4)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helix: 1
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9684
    • Cytoplasmic Membrane Score: 0.0137
    • Cell wall & surface Score: 0.0008
    • Extracellular Score: 0.0171
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 0.83
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.011767
    • TAT(Tat/SPI): 0.000746
    • LIPO(Sec/SPII): 0.001509
  • predicted transmembrane helices (TMHMM): 1

⊟Accession numbers[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MTVAEKKEWYLEYEIEINRPGLLGDVSSLLGMLGISIVTINGVDQGKRGLLIKTDNLEKVERFEQIARGINEIEITKLKKPELRDRLAVRHGRYIEQDAKDKKTFRFEREDLGLLVDFLAELFKEEGHKLIGIRGMPRVGKTESIVAGSVCAHKRWLFISSTLIKQTVRSSLIKGEYDANHVYIIDGAVTARESNPKHQELVNEVMTLPSIKVVEHPDLFVETSTCTMEDFDYIIELRENENQEIHYEEMKKQTVQSKNNLDFGDPFGGGFGFFE

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Additional information (user-provided)[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Other information (user-provided)[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]


⊟Relevant publications[edit | edit source]

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