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NCBI: 26-AUG-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA1053 [new locus tag: SA_RS05980 ]
  • pan locus tag?: SAUPAN003492000
  • symbol: rpoZ
  • pan gene symbol?: rpoZ
  • synonym:
  • product: DNA-directed RNA polymerase subunit omega

⊟Additional information (user-provided)[edit | edit source]

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA1053 [new locus tag: SA_RS05980 ]
  • symbol: rpoZ
  • product: DNA-directed RNA polymerase subunit omega
  • replicon: chromosome
  • strand: +
  • coordinates: 1191655..1191873
  • length: 219
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    ATGTTAAATCCACCTTTAAACCAATTAACGTCACAAATTAAATCAAAGTATTTAATTGCA
    ACAACTGCAGCGAAAAGAGCGCGTGAAATTGATGAACAACCTGAAACTGAATTATTAAGT
    GAATATCATTCATTTAAACCAGTTGGTAGAGCGTTAGAAGAAATTGCTGACGGTAAAATT
    CGCCCTGTTATTTCAAGTGATTATTATGGTAAAGAATAG
    60
    120
    180
    219


⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA1053 [new locus tag: SA_RS05980 ]
  • symbol: RpoZ
  • description: DNA-directed RNA polymerase subunit omega
  • length: 72
  • theoretical pI: 5.84158
  • theoretical MW: 8150.19
  • GRAVY: -0.626389

⊟Function[edit | edit source]

  • reaction:
    EC 2.7.7.6?  ExPASy
    DNA-directed RNA polymerase Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1)
  • TIGRFAM:
    Genetic information processing Transcription DNA-dependent RNA polymerase DNA-directed RNA polymerase, omega subunit (TIGR00690; EC 2.7.7.6; HMM-score: 46.5)
  • TheSEED  :
    • DNA-directed RNA polymerase omega subunit (EC 2.7.7.6)
    RNA Metabolism Transcription RNA polymerase bacterial  DNA-directed RNA polymerase omega subunit (EC 2.7.7.6)
  • PFAM:
    no clan defined RNA_pol_Rpb6; RNA polymerase Rpb6 (PF01192; HMM-score: 59)
    and 1 more
    HAMP (CL0681) HAMP_2; HAMP domain (PF18947; HMM-score: 11.6)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.8994
    • Cytoplasmic Membrane Score: 0.039
    • Cell wall & surface Score: 0.0003
    • Extracellular Score: 0.0614
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.01031
    • TAT(Tat/SPI): 0.001037
    • LIPO(Sec/SPII): 0.002295
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MLNPPLNQLTSQIKSKYLIATTAAKRAREIDEQPETELLSEYHSFKPVGRALEEIADGKIRPVISSDYYGKE

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Additional information (user-provided)[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Other information (user-provided)[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]


⊟Relevant publications[edit | edit source]

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