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NCBI: 26-AUG-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA1030 [new locus tag: SA_RS05865 ]
  • pan locus tag?: SAUPAN003457000
  • symbol: SA1030
  • pan gene symbol?: —
  • synonym: pgeF
  • product: hypothetical protein

⊟Additional information (user-provided)[edit | edit source]

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA1030 [new locus tag: SA_RS05865 ]
  • symbol: SA1030
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 1167214..1168005
  • length: 792
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    GTGAATGATAATTTTAAAAAGCAACCGCATCATTTAATATATGAAGAATTATTACAACAA
    GGTATTACTCTAGGTATTACAACTAGAGGAGATGGTTTAAGCGACTATCCTAAAAATGCT
    TTTAATATGGCGAGATATATTGATGATCGCCCATATAATATTACTCAACATCAATTGCAA
    TTAGCTGAAGAAATTGCGTTTGATAGAAAAAATTGGGTGTTTCCCATCCAAACACATGAA
    AATAAAGTCGCTTGTATTACAAAGGATGATATAGGCACAAATATAGACACTTTAACTGAT
    GCGCTTCATGGTATTGATGCGATGTACACATATGATAGTAATGTCTTATTAACGATGTGT
    TATGCAGACTGTGTACCAGTATATTTTTATAGTACAAAACATCATTTTATTGCATTGGCG
    CATGCAGGTTGGCGTGGTACCTATACTGAAATTGTAAAAGAAGTGCTAAAACATGTGAAC
    TTTGATTTGAAAGACTTACATGTCGTTATTGGACCATCTACATCATCAAGTTATGAAATT
    AATGATGATATTAAAAATAAATTTGAAACATTGCCAATTGATAGTGCCAACTATATTGAA
    ACTAGAGGACGAGATCGTCATGGTATTGATTTGAAAAAAGCCAATGCTGAATTATTAAAT
    TATTATGGTGTTCCTAAAGAAAATATTTATACGACAGCGTATGCTACATCTGAACATTTA
    GAATTATTTTTCTCTTATCGATTAGAAAAAGGTCAAACAGGACGCATGTTAGCATTCATT
    GGTCAACAGTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    792


⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA1030 [new locus tag: SA_RS05865 ]
  • symbol: SA1030
  • description: hypothetical protein
  • length: 263
  • theoretical pI: 6.07485
  • theoretical MW: 30256.9
  • GRAVY: -0.44943

⊟Function[edit | edit source]

  • reaction:
    EC 1.10.3.-?  ExPASy
  • TIGRFAM:
    Unknown function General YfiH family protein (TIGR00726; HMM-score: 152.5)
  • TheSEED  :
    • Peptidoglycan editing factor PgeF
  • PFAM:
    CNF1_YfiH (CL0663) Cu-oxidase_4; Multi-copper polyphenol oxidoreductase laccase (PF02578; HMM-score: 202.2)
    and 1 more
    no clan defined AcrIIA4; Anti-CRISPR Suppressor AcrIIA4 (PF24304; HMM-score: 14.6)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors: Cu cation
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9813
    • Cytoplasmic Membrane Score: 0.0013
    • Cell wall & surface Score: 0.0022
    • Extracellular Score: 0.0152
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.007382
    • TAT(Tat/SPI): 0.000686
    • LIPO(Sec/SPII): 0.001804
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MNDNFKKQPHHLIYEELLQQGITLGITTRGDGLSDYPKNAFNMARYIDDRPYNITQHQLQLAEEIAFDRKNWVFPIQTHENKVACITKDDIGTNIDTLTDALHGIDAMYTYDSNVLLTMCYADCVPVYFYSTKHHFIALAHAGWRGTYTEIVKEVLKHVNFDLKDLHVVIGPSTSSSYEINDDIKNKFETLPIDSANYIETRGRDRHGIDLKKANAELLNYYGVPKENIYTTAYATSEHLELFFSYRLEKGQTGRMLAFIGQQ

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Additional information (user-provided)[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Other information (user-provided)[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]


⊟Relevant publications[edit | edit source]

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