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NCBI: 26-AUG-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus N315
- locus tag: SA0628 [new locus tag: SA_RS03600 ]
- pan locus tag?: SAUPAN002556000
- symbol: SA0628
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SA0628 [new locus tag: SA_RS03600 ]
- symbol: SA0628
- product: hypothetical protein
- replicon: chromosome
- strand: +
- coordinates: 724337..725551
- length: 1215
- essential: no DEG other strains
⊟Accession numbers[edit | edit source]
- Gene ID: 1123435 NCBI
- RefSeq: NP_373883 NCBI
- BioCyc: see SA_RS03600
- MicrobesOnline: 102909 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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1201ATGTTTGCAGCGTTATTACAAATAAAGAATTATAAACTCTTTGTTGCTAATATGTTTCTA
CTAGGTATGGGTATTGCGGTTACGGTCCCATATCTTGTTCTTTTTGCAACTAAAGATTTA
GGTATGACAACAAATCAGTATGGATTACTTCTAGCATCTGCAGCGATTAGCCAGTTTACA
GTAAATTCAATTATTGCTAGATTTTCGGATACGCATCACTTTAATAGAAAAATTATTATT
ATTCTCGCATTATTAATGGGTGCGCTTGGTTTTTCAATATACTTTTTTGTAGATACAATC
TGGTTATTCATATTACTATATGCGATTTTCCAAGGATTATTTGCACCAGCAATGCCCCAA
CTTTACGCATCTGCTAGAGAATCTATCAATGTTTCAAGCTCTAAAGATAGAGCTCAATTT
GCCAACACAGTATTACGTTCAATGTTCTCATTGGGCTTTTTATTTGGTCCATTTATTGGT
GCCCAATTAATCGGTTTAAAAGGCTATGCTGGATTGTTTGGTGGAACAATAAGTATCATT
TTATTTACTTTAGTACTTCAAGTGTTTTTCTATAAGGATTTAAACATTAAACACCCTATT
AGTACGCAACAACATGTTGAAAAAATTGCTCCTAATATGTTTAAAGACAAAACGCTTTTA
TTACCATTTATTGCATTTATTTTATTACACATTGGACAATGGATGTATACGATGAATATG
CCTTTATTTGTTACTGATTATTTAAAAGAAAATGAGCAACATGTCGGTTATTTAGCTAGT
TTATGTGCTGGTTTAGAAGTGCCATTTATGATCATTCTTGGCGTTTTATCATCTAGATTA
CATACTCGAACATTGTTGATTTATGGAGCGATTTTTGGTGGTTTATTCTACTTCAGCATT
GGGGTATTTAAAAACTTCTATATGATGTTAGCAGGACAGGTATTTTTAGCTATTTTCTTA
GCGGTTCTTTTAGGAATTGGTATTAGTTATTTCCAAGATATCTTACCAGATTTTCCAGGA
TACGCCTCAACACTATTTTCTAATGCAATGGTTATTGGACAGTTAGGCGGTAACCTATTA
GGTGGTGCTATGAGTCACTGGGTAGGTTTGGAAAATGTATTTTTTGTATCAGCAGCATCA
ATCATGTTAGGTATGATACTTATATTCTTTACTAAAAATCAAAAAATTACAAAAGAGGAT
ATGATATCAACATGA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SA0628 [new locus tag: SA_RS03600 ]
- symbol: SA0628
- description: hypothetical protein
- length: 404
- theoretical pI: 9.52783
- theoretical MW: 44925.3
- GRAVY: 0.816089
⊟Function[edit | edit source]
- TIGRFAM: Transport and binding proteins Carbohydrates, organic alcohols, and acids sugar efflux transporter (TIGR00899; HMM-score: 161.3)and 5 moreTransport and binding proteins Cations and iron carrying compounds H+ Antiporter protein (TIGR00900; HMM-score: 44.9)multidrug resistance protein (TIGR00880; HMM-score: 41.1)Transport and binding proteins Carbohydrates, organic alcohols, and acids D-galactonate transporter (TIGR00893; HMM-score: 18.5)Cellular processes Toxin production and resistance drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family (TIGR00711; HMM-score: 4.6)Transport and binding proteins Other drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family (TIGR00711; HMM-score: 4.6)
- TheSEED :
- Sugar efflux transpoter
- PFAM: MFS (CL0015) MFS_1; Major Facilitator Superfamily (PF07690; HMM-score: 120.4)and 3 moreMFS_1_like; MFS_1 like family (PF12832; HMM-score: 28.9)ATG22; Vacuole effluxer Atg22 like (PF11700; HMM-score: 20.3)no clan defined Ilm1; Increased loss of mitochondrial DNA protein 1 (PF10311; HMM-score: 12)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 12
- LocateP: Multi-transmembrane
- Prediction by SwissProt Classification: Membrane
- Pathway Prediction: Sec-(SPI)
- Intracellular possibility: 0.17
- Signal peptide possibility: -1
- N-terminally Anchored Score: 1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.033799
- TAT(Tat/SPI): 0.002657
- LIPO(Sec/SPII): 0.009227
- predicted transmembrane helices (TMHMM): 12
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MFAALLQIKNYKLFVANMFLLGMGIAVTVPYLVLFATKDLGMTTNQYGLLLASAAISQFTVNSIIARFSDTHHFNRKIIIILALLMGALGFSIYFFVDTIWLFILLYAIFQGLFAPAMPQLYASARESINVSSSKDRAQFANTVLRSMFSLGFLFGPFIGAQLIGLKGYAGLFGGTISIILFTLVLQVFFYKDLNIKHPISTQQHVEKIAPNMFKDKTLLLPFIAFILLHIGQWMYTMNMPLFVTDYLKENEQHVGYLASLCAGLEVPFMIILGVLSSRLHTRTLLIYGAIFGGLFYFSIGVFKNFYMMLAGQVFLAIFLAVLLGIGISYFQDILPDFPGYASTLFSNAMVIGQLGGNLLGGAMSHWVGLENVFFVSAASIMLGMILIFFTKNQKITKEDMIST
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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