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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_RS14315 [old locus tag: NWMN_2494 ]
  • pan locus tag?: SAUPAN006281000
  • symbol: NWMN_RS14315
  • pan gene symbol?: panD
  • synonym:
  • product: aspartate 1-decarboxylase

⊟Additional information (user-provided)[edit | edit source]

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_RS14315 [old locus tag: NWMN_2494 ]
  • symbol: NWMN_RS14315
  • product: aspartate 1-decarboxylase
  • replicon: chromosome
  • strand: -
  • coordinates: 2739782..2740153
  • length: 372
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_009641 (2739782..2740153) NCBI
  • BioCyc:
  • MicrobesOnline: see NWMN_2494

⊟Phenotype[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    ATGATGAATGCTAAAATTCATAGAGCAAGAGTGACTGAGTCAAATTTAAATTATGTAGGT
    AGCATTACGATTGATTCAGATATATTGGAAGCGGTAGACATCTTGCCAAATGAAAAAGTA
    GCCATCGTGAATAATAATAATGGTGCACGTTTTGAAACATACGTAATAGCTGGTGAAAGA
    GGTAGTGGTAAAATTTGTTTAAACGGTGCAGCGTCAAGACTTGTTGAAGTAGGCGATGTA
    GTCATAATCATGACTTATGCACAGTTGAATGAAGAAGAAATTAAAAACCATGCACCTAAA
    GTAGCAGTAATGAATGAAGATAATGTCATTATTGAAATGATTCATGAAAAAGAAAATACG
    ATAGTGTTATAA
    60
    120
    180
    240
    300
    360
    372


⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: NWMN_RS14315 [old locus tag: NWMN_2494 ]
  • symbol: NWMN_RS14315
  • description: aspartate 1-decarboxylase
  • length: 123
  • theoretical pI: 4.6011
  • theoretical MW: 13548.4
  • GRAVY: -0.00731707

⊟Function[edit | edit source]

  • reaction:
    EC 4.1.1.11?  ExPASy
    Aspartate 1-decarboxylase L-aspartate = beta-alanine + CO2
  • TIGRFAM:
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Pantothenate and coenzyme A aspartate 1-decarboxylase (TIGR00223; EC 4.1.1.11; HMM-score: 172.6)
    and 1 more
    crotonyl-CoA carboxylase/reductase (TIGR01751; EC 1.3.1.85; HMM-score: 16.9)
  • TheSEED: see NWMN_2494
  • PFAM:
    DPBB (CL0199) Asp_decarbox; Aspartate decarboxylase (PF02261; HMM-score: 168.6)
    and 1 more
    Beta_propeller (CL0186) PQQ_2; PQQ-like domain (PF13360; HMM-score: 11.5)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors: pyruvate
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9675
    • Cytoplasmic Membrane Score: 0.0017
    • Cell wall & surface Score: 0.0005
    • Extracellular Score: 0.0303
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.010013
    • TAT(Tat/SPI): 0.000263
    • LIPO(Sec/SPII): 0.00041
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MMNAKIHRARVTESNLNYVGSITIDSDILEAVDILPNEKVAIVNNNNGARFETYVIAGERGSGKICLNGAASRLVEVGDVVIIMTYAQLNEEEIKNHAPKVAVMNEDNVIIEMIHEKENTIVL

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for NCTC8325
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Additional information (user-provided)[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Other information (user-provided)[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]


⊟Relevant publications[edit | edit source]

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