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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40
NCBI: 02-MAR-2017
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus Newman
- locus tag: NWMN_RS10165 [old locus tag: NWMN_1778 ]
- pan locus tag?: SAUPAN001716000
- symbol: NWMN_RS10165
- pan gene symbol?: —
- synonym:
- product: peptidase
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: NWMN_RS10165 [old locus tag: NWMN_1778 ]
- symbol: NWMN_RS10165
- product: peptidase
- replicon: chromosome
- strand: -
- coordinates: 1990961..1992862
- length: 1902
- essential: unknown
⊟Accession numbers[edit | edit source]
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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1861ATGACAATAACTATTAAACCACCTAAAGGTAATGGCGCACCTGTACCAGTAGAAACAACT
TTAGTAAAAAAAGTTAATGCTGACGGTGTATTAACTTTTGATATTCTAGAAAATAAATAT
ACTTATGAAGTTATTAACGCTATAGGGAAAAGATGGATTGTTAGTCATGTCGAAGGTGAA
AACGACAAGAAAGAATATGTAATAACTGTCATTGATAGGAAATCAGAAGGCGACAGACAA
CTGGTTGAATGTACTGCTAGAGAGATTCCTATAGACAAGTTAATGATTGATAGGATTTAT
GTTAATGTAACAGGATCTTTTACAGTAGAAAGATATTTTAACATTGTGTTTCAAGGTACT
GGAATGCTTTTTGAAGTCGAAGGTAAGGTTAAGTCTTCGAAGTTTGAAAATGGTGGTGAA
GGCGACACAAGGTTAGAAATGTTTAAAAAGGGATTAGAACATTTCGGTTTAGAATATAAA
ATAACGTATGACAAAAAGAAAGACAGATATAAGTTTGTATTGACGCCTTTTGCAAATCAA
AAAGCGTCTTATTTTATTTCTGACGAAGTCAACGCCAACGCTATAAAACTCGAGGAAGAT
GCAAGTGATTTCGCCACCTTCATTAGAGGATATGGTAATTATTCAGGAGAAGAAACATTC
GAACACGCTGGGCTCGTAATGGAAGCTAGAAGCGCATTAGCTGAGATATATGGCGATATC
CACGCAGAACCATTTAAAGATGGTAAAGTGACTGACCAAGAAACTATGGATAAAGAATTG
CAATCGAGATTGAAAAAGTCGTTAAAACAATCTTTGTCTTTAGATTTTTTGGTCTTAAGA
GAATCATATCCAGAAGCAGACCCACAACCCGGAGACATAGTACAAATAAAATCTACCAAA
CTAGGTTTGAATGATTTAGTCCGTATAGTACAAGTTAAAACGATTAGGGGTATAAACAAT
GTAATTGTTAAGCAAGATGTAACGCTTGGTGAGTTTAATCGAGAACAACGATATATGAAG
AAAGTAAATACTGCTGCTAATTATGTTTCTGGATTAAACGATGTTAACCTTTCTAATCCT
AGTAAAGCGGCAGAAAACTTAAAATCTAAAGTTGCATCAATAGCTAAATCAACACTCGAT
TTGATGAGTAGAACTGATTTGATTGAAGATAAACAACAGAAGGTAAGCTCTAAAACTGTG
ACTACATCTGACGGCACTATCGTTCATGATTTTATAGATAAATCAAACATTAAAGATGTA
AAAACAATTGGAACGATTGGCGATTCTGTAGCTAGAGGATCACATGCGAAAGCAAATTTC
ACTGAAATGTTAGGCAATAAATTAAAAGCCAAAACAACAAACCTTGCAAGAGGTGGCGCT
ACAATGGCAACAGTTCCAATAGGTAAAGAAGCGGTAGAAAACAGCATTTATAGACAAGCA
GAGCAAATAAGAGGAGACCTAATCATATTACAAGGTACAGATGATGACTGGTTACATGGT
TATTGGGCAGGCGTACCGATAGGCACTGATAAAACGGATACTAAAACGTTTTATGGTGCC
TTTTGTTCTGCAATTGAAGTTATTCGGAAAAATAATCCAACTTCAAAAATACTTGTAATG
ACAGCTACTAGACAATGTCCTATGAGTGGCACAACGATACGTCGTAAAGATACTGATAAA
AACAAATTAGGGTTAACGTTAGAGGATTATGTCAACGCTCAGATATTGGCTTGTAGTGAA
TTGGATGTACCAGTATATGATGCCTATCATACAGATTATTTTAAGCCATATAATCCAGCG
TTCAGAAAATCAAGTATGCCAGACGGATTGCATCCGAACGAGAGGGGTCATGAAGTTATT
ATGTACGAACTTATTAAAAATTATTACCAGTTTTACGGATAG60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: NWMN_RS10165 [old locus tag: NWMN_1778 ]
- symbol: NWMN_RS10165
- description: peptidase
- length: 633
- theoretical pI: 7.06767
- theoretical MW: 70973.1
- GRAVY: -0.452133
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED:
- PFAM: Phage_barrel (CL0504) Prophage_tail; Prophage endopeptidase tail (PF06605; HMM-score: 78.6)and 2 moreSGNH_hydrolase (CL0264) Lipase_GDSL_2; GDSL-like Lipase/Acylhydrolase family (PF13472; HMM-score: 54.4)Lipase_GDSL; GDSL-like Lipase/Acylhydrolase (PF00657; HMM-score: 24)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.008885
- TAT(Tat/SPI): 0.000504
- LIPO(Sec/SPII): 0.000846
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MTITIKPPKGNGAPVPVETTLVKKVNADGVLTFDILENKYTYEVINAIGKRWIVSHVEGENDKKEYVITVIDRKSEGDRQLVECTAREIPIDKLMIDRIYVNVTGSFTVERYFNIVFQGTGMLFEVEGKVKSSKFENGGEGDTRLEMFKKGLEHFGLEYKITYDKKKDRYKFVLTPFANQKASYFISDEVNANAIKLEEDASDFATFIRGYGNYSGEETFEHAGLVMEARSALAEIYGDIHAEPFKDGKVTDQETMDKELQSRLKKSLKQSLSLDFLVLRESYPEADPQPGDIVQIKSTKLGLNDLVRIVQVKTIRGINNVIVKQDVTLGEFNREQRYMKKVNTAANYVSGLNDVNLSNPSKAAENLKSKVASIAKSTLDLMSRTDLIEDKQQKVSSKTVTTSDGTIVHDFIDKSNIKDVKTIGTIGDSVARGSHAKANFTEMLGNKLKAKTTNLARGGATMATVPIGKEAVENSIYRQAEQIRGDLIILQGTDDDWLHGYWAGVPIGTDKTDTKTFYGAFCSAIEVIRKNNPTSKILVMTATRQCPMSGTTIRRKDTDKNKLGLTLEDYVNAQILACSELDVPVYDAYHTDYFKPYNPAFRKSSMPDGLHPNERGHEVIMYELIKNYYQFYG
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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