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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40
NCBI: 02-MAR-2017
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus Newman
- locus tag: NWMN_RS10135 [old locus tag: NWMN_1773 ]
- pan locus tag?: SAUPAN001709000
- symbol: NWMN_RS10135
- pan gene symbol?: —
- synonym:
- product: cell wall hydrolase
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: NWMN_RS10135 [old locus tag: NWMN_1773 ]
- symbol: NWMN_RS10135
- product: cell wall hydrolase
- replicon: chromosome
- strand: -
- coordinates: 1984284..1986182
- length: 1899
- essential: unknown
⊟Accession numbers[edit | edit source]
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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1861ATGGGATTACCTAATCCAAAAAACAGAAAACCTACAGCTAGTGAAGTAGTAGAGTGGGCT
TTGTATATCGCTAAAAATAAAATAGCTATTGATGTACCTGGTTCTGGAATGGGAGCACAA
TGCTGGGATTTACCTAATTATTTACTCGATAAATATTGGGGGTTTAGAACATGGGGAAAT
GCTGATGCTATGGCTCAAAAATCCAATTATAGAGGTAGAGATTTCAAGATAATTAGAAAT
ACAAAAGATTTTGTACCACAACCAGGCGACTGGGGTGTTTGGACTGGTGGTTGGGCAGGA
CATGTAAACATTGTAGTGGGACCATGCACAAAAGACTATTGGTATGGCGTAGATCAAAAC
TGGTATACAAATAACGCAACAGGAAGTCCACCTTATAAAATTAAACACTCTTATCATGAT
GGACCAGGTGGAGGGGTTAAATATTTTGTTAGACCACCATATCATCCAGACAAAACTACA
CCGGCACCTAAACCAGAAGATGATAGTGATGATAACGAAAAAAATAATAAAAAAGTTCCA
ATTTGGAAAGATGTAACAACTATAAAGTACACTATTTCTAGCCAAGAGGTTAATTATCCA
GAATATATTTATCACTTTATAGTAGAAGGTAATCGACGACTCGAAAAACCTAAAGGAATA
ATGATTAGAAACGCACAAACGATGAGCTCGGTAGAAAGTTTATATAACAGTAGGAAGAAA
TACAAACAGGATGTAGAATATCCCCACTTTTATGTTGATAGACATAATATTTGGGCACCT
AGAAGAGCTGTATTTGAAGTTCCTAATGAACCTGATTATATAGTTATAGACGTATGTGAA
GATTATAGTGCGAGTAAAAATGAATTTATTTTTAATGAGATTCACGCAATGGTTGTAGCT
GTAGATATGATGGCCAAATATGAGATACCTCTAAGTATTGAAAATTTAAAAGTAGACGAC
AGCATTTGGCGTTCAATGTTGGAACATGTTAATTGGAATATGATTGACAACGGTGTTCCT
CCTAAAGATAAATACGAAGCATTAGAAAAGGCATTACTTAATATATTTAAAAACAGAGAA
AAATTATTAAATTCTATAACTAAGCCAACAGTAACAAAATCTAGAATAAAAGTTATGGTA
GATAATAAAAACGCTGATATAGCGAATGTAAGAGACTCGTCACCAACAGCCAACAATGGT
TCGGCATCTAAACAACCGCAGATCATAACAGAAACGAGTCCTTATACATTCAAACAAGCA
CTGGATAAACAAATGGCAAGAGGTAACCCGAAAAAATCTAATGCTTGGGGTTGGGCTAAC
GCTACACGAGCACAAACGAGTTCAGCAATGAATGTTAAACGAATATGGGAAAGTAACACG
CAGTGCTACCAAATGCTTAATTTAGGCAAGTATCAAGGTGTTTCAGTTAGCGCACTTAAT
AAGATACTTAAAGGTAAGGGAACATTGAATAATCAAGGTAAAGCGTTCGCAGAAGCTTGT
AAAAAGCACAGCATTAATGAAATTTATTTAATCGCGCATGCTTTCTTAGAAAGTGGATAT
GGAACAAGTAACTTCGCTAACGGAAAAGATGGAGTATACAACTACTTCGGCATTGGTGCT
TACGACAACAATCCTAACTACGCAATGACGTTTGCAAGGAATAAAGGTTGGACATCTCCA
GCAAAAGCAATCATGGGCGGTGCTAGCTTCGTAAGAAAGGATTACATCAATAAAGGTCAA
AACACATTGTACCGAATTAGATGGAATCCTAAGAATCCAGCTACCCACCAATACGCTACT
GCTATAGAGTGGTGCCAACATCAAGCAAGTACAATCGCTAAGTTATATAAACAAATCGGC
TTAAAAGGTATCTACTTCACAAGGGATAAATATAAATAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: NWMN_RS10135 [old locus tag: NWMN_1773 ]
- symbol: NWMN_RS10135
- description: cell wall hydrolase
- length: 632
- theoretical pI: 9.77316
- theoretical MW: 71975.1
- GRAVY: -0.684335
⊟Function[edit | edit source]
- TIGRFAM: flagellar rod assembly protein/muramidase FlgJ (TIGR02541; HMM-score: 22.5)
- TheSEED:
- PFAM: Lysozyme (CL0037) Glucosaminidase; Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase (PF01832; HMM-score: 49.2)and 3 morePeptidase_CA (CL0125) CHAP; CHAP domain (PF05257; HMM-score: 29.9)no clan defined INCENP_ARK-bind; Inner centromere protein, ARK binding region (PF03941; HMM-score: 12.7)Lysozyme (CL0037) SLT_2; Transglycosylase SLT domain (PF13406; HMM-score: 12.5)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Extracellular
- Cytoplasmic Score: 0.01
- Cytoplasmic Membrane Score: 0.09
- Cellwall Score: 0.18
- Extracellular Score: 9.72
- Internal Helices: 0
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.031405
- TAT(Tat/SPI): 0.001237
- LIPO(Sec/SPII): 0.002792
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MGLPNPKNRKPTASEVVEWALYIAKNKIAIDVPGSGMGAQCWDLPNYLLDKYWGFRTWGNADAMAQKSNYRGRDFKIIRNTKDFVPQPGDWGVWTGGWAGHVNIVVGPCTKDYWYGVDQNWYTNNATGSPPYKIKHSYHDGPGGGVKYFVRPPYHPDKTTPAPKPEDDSDDNEKNNKKVPIWKDVTTIKYTISSQEVNYPEYIYHFIVEGNRRLEKPKGIMIRNAQTMSSVESLYNSRKKYKQDVEYPHFYVDRHNIWAPRRAVFEVPNEPDYIVIDVCEDYSASKNEFIFNEIHAMVVAVDMMAKYEIPLSIENLKVDDSIWRSMLEHVNWNMIDNGVPPKDKYEALEKALLNIFKNREKLLNSITKPTVTKSRIKVMVDNKNADIANVRDSSPTANNGSASKQPQIITETSPYTFKQALDKQMARGNPKKSNAWGWANATRAQTSSAMNVKRIWESNTQCYQMLNLGKYQGVSVSALNKILKGKGTLNNQGKAFAEACKKHSINEIYLIAHAFLESGYGTSNFANGKDGVYNYFGIGAYDNNPNYAMTFARNKGWTSPAKAIMGGASFVRKDYINKGQNTLYRIRWNPKNPATHQYATAIEWCQHQASTIAKLYKQIGLKGIYFTRDKYK
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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