From AureoWiki
Jump to navigation Jump to search

NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_RS08980 [old locus tag: NWMN_1602 ]
  • pan locus tag?: SAUPAN004359000
  • symbol: NWMN_RS08980
  • pan gene symbol?: pepQ
  • synonym:
  • product: dipeptidase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_RS08980 [old locus tag: NWMN_1602 ]
  • symbol: NWMN_RS08980
  • product: dipeptidase
  • replicon: chromosome
  • strand: +
  • coordinates: 1778962..1780017
  • length: 1056
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_009641 (1778962..1780017) NCBI
  • BioCyc:
  • MicrobesOnline: see NWMN_1602

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    ATGACAAAAATATCAAAAATAATAGACGAATTGAACAATCAACAAGCTGATGCAGCATGG
    ATTACAACACCGTTGAATGTATATTATTTTACTGGATACCGTAGCGAACCCCATGAAAGA
    TTATTTGCATTATTGATTAAGAAAGATGGTAAACAAGTACTATTTTGTCCAAAAATGGAA
    GTCGAAGAAGTCAAAGCATCACCTTTCACAGGTGAAATCGTTGGATATTTAGACACTGAA
    AACCCTTTTTCACTTTATCCTCAAACAATCAATAAATTACTAATTGAAAGCGAGCACTTA
    ACAGTAGCACGCCAAAAACAATTAATCTCTGGTTTCAATGTCAATTCATTCGGAGATGTT
    GATTTAACAATCAAACAATTGAGAAATATTAAATCCGAAGATGAAATTAGCAAAATACGT
    AAAGCTGCTGAGTTAGCAGATAAGTGTATCGAAATAGGTGTTTCTTATTTAAAAGAAGGT
    GTGACTGAATGTGAAGTAGTCAACCATATTGAGCAAACTATCAAACAATATGGCGTCAAT
    GAAATGAGTTTTGATACGATGGTTTTATTTGGAGATCATGCCGCATCACCTCATGGCACA
    CCAGGAGATCGCAGATTAAAAAGCAATGAATATGTACTATTTGATTTAGGTGTAATTTAT
    GAGCATTATTGTAGCGATATGACACGTACTATTAAATTTGGTGAACCTAGCAAAGAAGCA
    CAAGAAATTTATAATATTGTATTAGAAGCAGAAACATCTGCAATCCAAGCAATTAAACCT
    GGAATACCATTAAAAGATATCGATCATATCGCTAGAAATATTATTTCAGAAAAAGGTTAT
    GGTGAATATTTCCCTCATCGCTTAGGTCATGGCCTAGGATTACAAGAACATGAATATCAA
    GATGTTTCAAGTACTAATTCTAATTTGTTAGAAGCTGGCATGGTTATTACAATCGAACCA
    GGTATTTATGTACCTGGTGTTGCAGGTGTAAGAATTGAAGATGACATACTTGTCACTAAT
    GAAGGATATGAAGTATTAACACATTACGAAAAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1056

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: NWMN_RS08980 [old locus tag: NWMN_1602 ]
  • symbol: NWMN_RS08980
  • description: dipeptidase
  • length: 351
  • theoretical pI: 4.73222
  • theoretical MW: 39553.6
  • GRAVY: -0.294587

⊟Function[edit | edit source]

  • TIGRFAM:
    Genetic information processing Protein fate Protein modification and repair methionine aminopeptidase, type I (TIGR00500; EC 3.4.11.18; HMM-score: 87.9)
    ectoine utilization protein EutD (TIGR02993; EC 3.-.-.-; HMM-score: 70.6)
    and 1 more
    Genetic information processing Protein fate Protein modification and repair methionine aminopeptidase, type II (TIGR00501; EC 3.4.11.18; HMM-score: 47.4)
  • TheSEED: see NWMN_1602
  • PFAM:
    no clan defined Peptidase_M24; Metallopeptidase family M24 (PF00557; HMM-score: 240.4)
    and 1 more
    AMP_N-like (CL0356) Creatinase_N; Creatinase/Prolidase N-terminal domain (PF01321; HMM-score: 84.2)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.97
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0.01
    • Extracellular Score: 0.02
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9948
    • Cytoplasmic Membrane Score: 0.0014
    • Cell wall & surface Score: 0.0003
    • Extracellular Score: 0.0035
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.006431
    • TAT(Tat/SPI): 0.000164
    • LIPO(Sec/SPII): 0.000732
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MTKISKIIDELNNQQADAAWITTPLNVYYFTGYRSEPHERLFALLIKKDGKQVLFCPKMEVEEVKASPFTGEIVGYLDTENPFSLYPQTINKLLIESEHLTVARQKQLISGFNVNSFGDVDLTIKQLRNIKSEDEISKIRKAAELADKCIEIGVSYLKEGVTECEVVNHIEQTIKQYGVNEMSFDTMVLFGDHAASPHGTPGDRRLKSNEYVLFDLGVIYEHYCSDMTRTIKFGEPSKEAQEIYNIVLEAETSAIQAIKPGIPLKDIDHIARNIISEKGYGEYFPHRLGHGLGLQEHEYQDVSSTNSNLLEAGMVITIEPGIYVPGVAGVRIEDDILVTNEGYEVLTHYEK

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://fungenwikiserver.biologie.uni-greifswald.de/aureowiki/index.php?title=NWMN_RS08980&oldid=83787"