From AureoWiki
Jump to navigation Jump to search

NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_RS08150 [old locus tag: NWMN_1444 ]
  • pan locus tag?: SAUPAN004119000
  • symbol: NWMN_RS08150
  • pan gene symbol?: comGE
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_RS08150 [old locus tag: NWMN_1444 ]
  • symbol: NWMN_RS08150
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1614038..1614358
  • length: 321
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_009641 (1614038..1614358) NCBI
  • BioCyc:
  • MicrobesOnline: see NWMN_1444

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    TTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAAGTGTAAAGGTTCATTCTTAATAGAT
    AGTATGGCTGGATTTTTGCTAATTGGATTGATTACATTACTATTGATACCAATGATGAAT
    CAAATGCAAGCGAGTATAAACCATAAACTACAAACAATTGATGCTTCTAAAGTAATTTTG
    ACGACTGTATCTAAAATTAATAAAGAAGAACTTAAGAAGGGGGTAACTATAGGGAAGTAT
    GATATTAAGCAAAGTGACCAACAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAA
    AAGACATGTATACAGTATTAA
    60
    120
    180
    240
    300
    321

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: NWMN_RS08150 [old locus tag: NWMN_1444 ]
  • symbol: NWMN_RS08150
  • description: hypothetical protein
  • length: 106
  • theoretical pI: 9.8896
  • theoretical MW: 11985.2
  • GRAVY: -0.0518868

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: data available for N315, NCTC8325
  • PFAM:
    no clan defined DUF2547; Protein of unknown function (DUF2547) (PF10818; HMM-score: 15.3)
    Flp_Fap; Flp/Fap pilin component (PF04964; HMM-score: 15)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helix: 1
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.419818
    • TAT(Tat/SPI): 0.011514
    • LIPO(Sec/SPII): 0.003146
  • predicted transmembrane helices (TMHMM): 1

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MKKEEFVMKSYKCKGSFLIDSMAGFLLIGLITLLLIPMMNQMQASINHKLQTIDASKVILTTVSKINKEELKKGVTIGKYDIKQSDQQICAISKNTTSYQKTCIQY

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://fungenwikiserver.biologie.uni-greifswald.de/aureowiki/index.php?title=NWMN_RS08150&oldid=74992"