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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_RS04820 [old locus tag: NWMN_0857 ]
  • pan locus tag?: SAUPAN003134000
  • symbol: NWMN_RS04820
  • pan gene symbol?: opp3C
  • synonym:
  • product: ABC transporter permease

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_RS04820 [old locus tag: NWMN_0857 ]
  • symbol: NWMN_RS04820
  • product: ABC transporter permease
  • replicon: chromosome
  • strand: +
  • coordinates: 951721..952791
  • length: 1071
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_009641 (951721..952791) NCBI
  • BioCyc:
  • MicrobesOnline: see NWMN_0857

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    ATGGCTGAAAATAAAAACAATTTGTCGATTAACGACGATCATTCTAATGCAGCTATGACG
    CATACCTCTGACGCTATCGCATCATCTGATTTTATTATTAGAGAATTAGATTTGAATCAG
    GAACCTGAAATGCAACGAGAAAGCAAAAACTTTTGGCAAGATGCTTGGGCTCAGTTAAAA
    CGAAATAAGTTAGCTGTTGTCGGTATGATAGGTTTAATTATCATTGTAATATTTGCTTTT
    ATCGGTCCAGTTATAAATAAACATGATTATGCTGAACAAAATGTAGAACATAGAAATCTT
    CCGGCAAAAATACCTGTATTAGACAAAGTTCCATTTTTACCTTTTGATGGTAAAGATGCA
    GATGGCAAGGATGCTTATAAAGCAGCAAATGCTAAAGAAAATTATTGGTTTGGTACTGAT
    CAGTTGGGTCGAGATTTATGGACAAGAACATGGAAAGGTGCTCAAATTTCATTGTTTATC
    GGTGTTGTTGCAGCGATGTTAGATATTTTTATTGGTGTTGTATATGGTGCGATTTCTGGA
    TTCTTCGGTGGACGTGTCGATACGATTATGCAACGTATACTTGAAGTCATAGCATCTATT
    CCGAATTTAATTGTCGTAATTTTATTTGTATTAATTTTTGAACCATCCATTTGGACAATT
    ATATTGGCTATGTCTATCACAGGCTGGTTAGGCATGAGCAGAGTTGTACGTGGAGAATTT
    TTAAAATTAAAAAATCAAGAGTTTGTCATGGCTTCGAAAACATTGGGGGCTTCAAAATTC
    AAATTGATATTTAAGCATATTTTACCTAATACATTAGGTGCTATCGTGGTTACATCAATG
    TTTACAGTACCTAGTGCTATTTTCTTCGAAGCATTTTTAAGTTTCATTGGTATAGGTGTA
    CCCGCACCTCAAACATCGTTAGGGTCATTAGTAAATGATGGGCGCGCAATGTTATTAATT
    TATCCACATGAATTATTTATACCAGCAATGATTTTAAGTTTATTAATTCTATTCTTTTAC
    TTATTTAGTGATGGATTACGTGATGCATTTGATCCGAAAATGCGTAAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1071

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: NWMN_RS04820 [old locus tag: NWMN_0857 ]
  • symbol: NWMN_RS04820
  • description: ABC transporter permease
  • length: 356
  • theoretical pI: 7.18495
  • theoretical MW: 39765.4
  • GRAVY: 0.35309

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Transport and binding proteins Cations and iron carrying compounds nickel ABC transporter, permease subunit NikC (TIGR02790; EC 3.6.3.24; HMM-score: 196.3)
    and 3 more
    Metabolism Transport and binding proteins Anions phosphonate ABC transporter, permease protein PhnE (TIGR01097; HMM-score: 30.8)
    Metabolism Transport and binding proteins Anions phosphate ABC transporter, permease protein PstA (TIGR00974; HMM-score: 17.4)
    Metabolism Transport and binding proteins Anions phosphate ABC transporter, permease protein PstC (TIGR02138; HMM-score: 13.5)
  • TheSEED: see NWMN_0857
  • PFAM:
    BPD_transp_1 (CL0404) BPD_transp_1; Binding-protein-dependent transport system inner membrane component (PF00528; HMM-score: 109.3)
    and 2 more
    no clan defined OppC_N; N-terminal TM domain of oligopeptide transport permease C (PF12911; HMM-score: 68.9)
    SNARE-fusion (CL0445) Synaptobrevin; Synaptobrevin (PF00957; HMM-score: 7.9)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 6
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 1
    • Cell wall & surface Score: 0
    • Extracellular Score: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.003312
    • TAT(Tat/SPI): 0.000473
    • LIPO(Sec/SPII): 0.000519
  • predicted transmembrane helices (TMHMM): 6

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MAENKNNLSINDDHSNAAMTHTSDAIASSDFIIRELDLNQEPEMQRESKNFWQDAWAQLKRNKLAVVGMIGLIIIVIFAFIGPVINKHDYAEQNVEHRNLPAKIPVLDKVPFLPFDGKDADGKDAYKAANAKENYWFGTDQLGRDLWTRTWKGAQISLFIGVVAAMLDIFIGVVYGAISGFFGGRVDTIMQRILEVIASIPNLIVVILFVLIFEPSIWTIILAMSITGWLGMSRVVRGEFLKLKNQEFVMASKTLGASKFKLIFKHILPNTLGAIVVTSMFTVPSAIFFEAFLSFIGIGVPAPQTSLGSLVNDGRAMLLIYPHELFIPAMILSLLILFFYLFSDGLRDAFDPKMRK

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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