From AureoWiki
Jump to navigation Jump to search

NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_RS03620 [old locus tag: NWMN_0638 ]
  • pan locus tag?: SAUPAN002549000
  • symbol: NWMN_RS03620
  • pan gene symbol?: —
  • synonym:
  • product: transcriptional regulator

⊟Additional information (user-provided)[edit | edit source]

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_RS03620 [old locus tag: NWMN_0638 ]
  • symbol: NWMN_RS03620
  • product: transcriptional regulator
  • replicon: chromosome
  • strand: +
  • coordinates: 722164..722880
  • length: 717
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_009641 (722164..722880) NCBI
  • BioCyc:
  • MicrobesOnline: see NWMN_0638

⊟Phenotype[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    ATGGGACGTAAATGGAATAACATTAAAGAAAAAAAGGCCCAAAAAGATAAAAACACAAGT
    AGAATATATGCGAAATTTGGTAAGGAGATTTATGTTGCAGCAAAATCTGGTGAACCCAAT
    CCAGAATCTAACCAAGCTTTAAGGTTGGTGCTTGAACGCGCTAAGACATATTCAGTGCCG
    AATCATATTATTGAAAAAGCAATAGATAAAGCTAAGGGTGCTGGAGACGAAAACTTTGAT
    CACCTAAGATATGAAGGATTTGGCCCAAGCGGATCAATGCTAATTGTTGATGCGTTAACA
    AATAATGTAAATCGTACTGCCTCTGATGTGCGAGCTGCTTTTGGTAAAAACGGCGGTAAT
    ATGGGTGTATCTGGATCAGTTGCTTATATGTTTGATCATGTGGCAACATTTGGTATTGAA
    GGAAAGTCTGTTGACGAAATACTTGAAACATTAATGGAACAAGATGTAGATGTAAATGAT
    GTGATTGACGATAATGGATTGACAATAGTCTATGCTGAACCAGATCAATTTGCAGTCGTT
    CAAGATGCGCTTCGTGCAGCAGGTGTTGAAGAATTTAAAGTTGCTGAATTTGAAATGTTA
    CCTCAAACAGATATTGAACTTTCTGAAGCGGACCAAGTAACATTTGAAAAATTAATCGAT
    GCATTAGAAGATTTAGAAGATGTACAAAACGTATTCCATAATGTGGATTTGAAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    717


⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: NWMN_RS03620 [old locus tag: NWMN_0638 ]
  • symbol: NWMN_RS03620
  • description: transcriptional regulator
  • length: 238
  • theoretical pI: 4.37556
  • theoretical MW: 26320.2
  • GRAVY: -0.413445

⊟Function[edit | edit source]

  • TIGRFAM:
    Signal transduction Regulatory functions DNA interactions DNA-binding regulatory protein, YebC/PmpR family (TIGR01033; HMM-score: 227.2)
    and 1 more
    Genetic information processing Protein fate Protein and peptide secretion and trafficking type VII secretion protein EccB (TIGR03919; HMM-score: 11)
  • TheSEED: see NWMN_0638
  • PFAM:
    no clan defined Transcrip_reg; TACO1/YebC second and third domain (PF01709; HMM-score: 168.1)
    and 2 more
    TACO1_YebC_N; TACO1/YebC protein N-terminal domain (PF20772; HMM-score: 92.7)
    GatB_YqeY (CL0279) GatB_Yqey; GatB domain (PF02637; HMM-score: 16.1)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.8252
    • Cytoplasmic Membrane Score: 0.0007
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.1741
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.01061
    • TAT(Tat/SPI): 0.000749
    • LIPO(Sec/SPII): 0.002688
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MGRKWNNIKEKKAQKDKNTSRIYAKFGKEIYVAAKSGEPNPESNQALRLVLERAKTYSVPNHIIEKAIDKAKGAGDENFDHLRYEGFGPSGSMLIVDALTNNVNRTASDVRAAFGKNGGNMGVSGSVAYMFDHVATFGIEGKSVDEILETLMEQDVDVNDVIDDNGLTIVYAEPDQFAVVQDALRAAGVEEFKVAEFEMLPQTDIELSEADQVTFEKLIDALEDLEDVQNVFHNVDLK

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Additional information (user-provided)[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Other information (user-provided)[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]


⊟Relevant publications[edit | edit source]

Retrieved from "http://fungenwikiserver.biologie.uni-greifswald.de/aureowiki/index.php?title=NWMN_RS03620&oldid=122657"