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NCBI: 06-JUL-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_1999 [new locus tag: NWMN_RS11570 ]
  • pan locus tag?: SAUPAN005381000
  • symbol: NWMN_1999
  • pan gene symbol?: sceD
  • synonym:
  • product: hypothetical protein

⊟Additional information (user-provided)[edit | edit source]

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_1999 [new locus tag: NWMN_RS11570 ]
  • symbol: NWMN_1999
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2220281..2220976
  • length: 696
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    ATGAAGAAAACATTACTCGCATCATCATTAGCAGTAGGTTTAGGAATCGTAGCAGGAAAT
    GCAGGTCACGAAGCCCATGCAAGTGAAGCGGACTTAAATAAAGCATCTTTAGCGCAAATG
    GCGCAATCAAATGATCAAACATTAAATCAAAAACCAATTGAAGCTGGGGCTTATAATTAT
    ACATTTGACTATGAAGGGTTTACTTATCACTTTGAATCAGATGGTACACACTTTGCTTGG
    AATTACCATGCAACAGGTACTAATGGAGCAGACATGAGTGCACAAGCACCTGCAACTAAT
    AATGTTGCACCATCAGCTGTTCAAGCTAATCAAGTACAATCACAAGAAGTTGAAGCACCA
    CAAAATGCTCAAACTCAACAACCACAAGCATCAACATCAAACAATTCACAAGTTACTGCA
    ACACCAACTGAATCAAAATCATCAGAAGGTTCATCAGTAAATGTGAATGCTCATCTAAAA
    CAAATTGCTCAACGTGAATCAGGTGGCAATATTCATGCTGTAAATCCAACATCAGGTGCA
    GCTGGTAAGTATCAATTCTTACAATCAACTTGGGATTCAGTAGCACCTGCTAAATATAAA
    GGTGTATCACCAGCAAATGCTCCTGAAAGTGTTCAAGATGCCGCAGCAGTAAAATTATAT
    AACACTGGTGGCGCTGGACATTGGGTTACTGCATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    696


⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: NWMN_1999 [new locus tag: NWMN_RS11570 ]
  • symbol: NWMN_1999
  • description: hypothetical protein
  • length: 231
  • theoretical pI: 5.79248
  • theoretical MW: 24065.9
  • GRAVY: -0.546753

⊟Function[edit | edit source]

  • reaction:
    EC 3.2.-.-?  ExPASy
  • TIGRFAM:
  • TheSEED  :
    • SceD-like transglycosylase, biomarker for vancomycin-intermediate strains
  • PFAM:
    Lysozyme (CL0037) Transglycosylas; Transglycosylase-like domain (PF06737; HMM-score: 89.8)
    and 4 more
    SLT; Transglycosylase SLT domain (PF01464; HMM-score: 23.6)
    no clan defined SIDD_N; Nonribosomal peptide synthetase sidD N-terminal (PF24895; HMM-score: 13.4)
    FtsA_C; Cell division protein FtsA, C-terminal (PF11983; HMM-score: 7.8)
    Lin-8; Ras-mediated vulval-induction antagonist (PF03353; HMM-score: 6.5)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Extracellular
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0.02
    • Extracellular Score: 9.98
    • Internal Helices: 0
  • DeepLocPro: Extracellular
    • Cytoplasmic Score: 0.0001
    • Cytoplasmic Membrane Score: 0.0004
    • Cell wall & surface Score: 0.0747
    • Extracellular Score: 0.9248
  • LocateP: Secretory(released) (with CS)
    • Prediction by SwissProt Classification: Extracellular
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: -0.17
    • Signal peptide possibility: 1
    • N-terminally Anchored Score: -2
    • Predicted Cleavage Site: HEAHASEA
  • SignalP: Signal peptide SP(Sec/SPI) length 27 aa
    • SP(Sec/SPI): 0.986312
    • TAT(Tat/SPI): 0.003284
    • LIPO(Sec/SPII): 0.008779
    • Cleavage Site: CS pos: 27-28. AHA-SE. Pr: 0.9175
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MKKTLLASSLAVGLGIVAGNAGHEAHASEADLNKASLAQMAQSNDQTLNQKPIEAGAYNYTFDYEGFTYHFESDGTHFAWNYHATGTNGADMSAQAPATNNVAPSAVQANQVQSQEVEAPQNAQTQQPQASTSNNSQVTATPTESKSSEGSSVNVNAHLKQIAQRESGGNIHAVNPTSGAAGKYQFLQSTWDSVAPAKYKGVSPANAPESVQDAAAVKLYNTGGAGHWVTA

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Other information (user-provided)[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]


⊟Relevant publications[edit | edit source]

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