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NCBI: 06-JUL-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_1517 [new locus tag: NWMN_RS08530 ]
  • pan locus tag?: SAUPAN004212000
  • symbol: NWMN_1517
  • pan gene symbol?: —
  • synonym: ruvX
  • product: Holliday junction resolvase-like protein

⊟Additional information (user-provided)[edit | edit source]

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_1517 [new locus tag: NWMN_RS08530 ]
  • symbol: NWMN_1517
  • product: Holliday junction resolvase-like protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1681303..1681731
  • length: 429
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    ATGTTACAACATAAAATTTTAGGACTCGATGTCGGTAGTAGAACGGTAGGAATTGCAATT
    AGTGATATAATGGGTTGGACGGCACAAGGATTAGACACACTCCGAATCAATGAAGAAAAT
    AATGAATTAGGTATTGACCAATTAGTAGACATTATTAAAAAACATAATGTGGGTACAGTC
    GTAATAGGACTACCTAAAAACATGAATAATTCAATAGGATTTCGAGGCGAAGCTTCGTTA
    ACATATAAAGAAAAATTATTAGAAGCTTATCCTTCTATTGAGATTGTGATGTGGGATGAA
    AGATTAAGCACAATGGCTGCTGAACGATCATTATTAGAAGCAGATGTTTCAAGACAAAAA
    AGAAAACAAGTGATTGATAAAATGGCAGCGGTATTTATTTTACAAGGCTATTTAGATTCA
    CTACATTAA
    60
    120
    180
    240
    300
    360
    420
    429


⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: NWMN_1517 [new locus tag: NWMN_RS08530 ]
  • symbol: NWMN_1517
  • description: Holliday junction resolvase-like protein
  • length: 142
  • theoretical pI: 5.68913
  • theoretical MW: 15865.3
  • GRAVY: -0.0711268

⊟Function[edit | edit source]

  • reaction:
    EC 3.1.-.-?  ExPASy
  • TIGRFAM:
    Unknown function General putative transcription antitermination factor YqgF (TIGR00250; HMM-score: 135.7)
    and 1 more
    Metabolism Energy metabolism Other tartrate dehydrogenase (TIGR02089; EC 1.1.1.93; HMM-score: 11.5)
  • TheSEED  :
    • Putative pre-16S rRNA nuclease YqgF
    CBSS-257314.1.peg.488  Putative Holliday junction resolvase YqgF
    and 1 more
    CBSS-281090.3.peg.464  Putative Holliday junction resolvase YqgF
  • PFAM:
    YqgF (CL0580) RuvX; Holliday junction resolvase (PF03652; HMM-score: 143.7)
    and 1 more
    RNase_H (CL0219) Terminase-T7_RNaseH-like; Terminase Bacteriophage T7, Ribonuclease H-like domain (PF22530; HMM-score: 12.5)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9961
    • Cytoplasmic Membrane Score: 0.0017
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.0022
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.029328
    • TAT(Tat/SPI): 0.001344
    • LIPO(Sec/SPII): 0.004666
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MLQHKILGLDVGSRTVGIAISDIMGWTAQGLDTLRINEENNELGIDQLVDIIKKHNVGTVVIGLPKNMNNSIGFRGEASLTYKEKLLEAYPSIEIVMWDERLSTMAAERSLLEADVSRQKRKQVIDKMAAVFILQGYLDSLH

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Additional information (user-provided)[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Other information (user-provided)[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]


⊟Relevant publications[edit | edit source]

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